Variant report

Variant	rs61900122
Chromosome Location	chr11:76689230-76689231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7924330	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519700	chr11:76637651-76709407	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1042924	chr11:76659477-76709407	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1040833	chr11:76667160-76709407	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv396	chr11:76670116-76702745	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1802222	chr11:76683305-76709407	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76660000-76710800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:76666800-76695400	Weak transcription	NHEK	skin
3	chr11:76672200-76697800	Weak transcription	Left Ventricle	heart
4	chr11:76672400-76696000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:76673000-76689600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:76673800-76690400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:76674400-76696000	Weak transcription	Small Intestine	intestine
8	chr11:76675000-76689800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:76675000-76691600	Weak transcription	Fetal Lung	lung
10	chr11:76675000-76721800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:76675000-76725600	Weak transcription	A549	lung
12	chr11:76675000-76729600	Weak transcription	Brain Angular Gyrus	brain
13	chr11:76683000-76736400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:76683200-76729200	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:76683400-76689600	Weak transcription	Fetal Brain Male	brain
16	chr11:76683400-76690600	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr11:76683600-76720400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:76683600-76728000	Weak transcription	Brain Anterior Caudate	brain
19	chr11:76684400-76699400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:76684800-76691000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:76685600-76689600	Weak transcription	Adipose Nuclei	Adipose
22	chr11:76686800-76689400	Weak transcription	Aorta	Aorta
23	chr11:76687600-76691400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr11:76687800-76690200	Weak transcription	Right Atrium	heart
25	chr11:76688000-76689600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
26	chr11:76688000-76690000	ZNF genes & repeats	Primary B cells from cord blood	blood
27	chr11:76688000-76690200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:76688000-76690200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
29	chr11:76688200-76689800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:76688200-76689800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
31	chr11:76688200-76689800	Strong transcription	Primary T cells from cord blood	blood
32	chr11:76688200-76690000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
33	chr11:76688200-76690000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr11:76688200-76690200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:76688200-76690200	ZNF genes & repeats	Dnd41	blood
36	chr11:76688400-76689400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
37	chr11:76688400-76689400	Strong transcription	Right Ventricle	heart
38	chr11:76688400-76690000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr11:76688400-76690200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
40	chr11:76688400-76690200	ZNF genes & repeats	Spleen	Spleen
41	chr11:76688400-76690400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
42	chr11:76688400-76695600	Weak transcription	HMEC	breast
43	chr11:76688600-76689400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:76688600-76689600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
45	chr11:76688600-76689600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:76688600-76689600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:76688600-76689600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:76688600-76689600	ZNF genes & repeats	Thymus	Thymus
49	chr11:76688600-76689800	ZNF genes & repeats	Brain Germinal Matrix	brain
50	chr11:76688600-76689800	ZNF genes & repeats	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links