Variant report

Variant	rs7924330
Chromosome Location	chr11:76631715-76631716
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:76517508..76519118-chr11:76629396..76631998,9	MCF-7	breast:
2	chr11:76445248..76448071-chr11:76628717..76631883,4	MCF-7	breast:
3	chr11:76630886..76632771-chr11:76660350..76662030,2	K562	blood:
4	chr11:76630144..76633520-chr11:76634878..76637709,3	K562	blood:
5	chr11:76546720..76547429-chr11:76631285..76632052,2	K562	blood:
6	chr11:76493213..76495963-chr11:76631032..76633538,2	MCF-7	breast:
7	chr11:76518111..76519175-chr11:76629549..76632027,10	K562	blood:
8	chr11:76631230..76632979-chr11:76654933..76656513,2	K562	blood:
9	chr11:76570391..76573422-chr11:76629389..76632436,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction
ENSG00000182704	Chromatin interaction
ENSG00000255100	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1062170	1.00[EUR][1000 genomes]
rs17135310	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17135319	1.00[EUR][1000 genomes]
rs17160169	1.00[EUR][1000 genomes]
rs2187498	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4341568	1.00[EUR][1000 genomes]
rs4597093	1.00[EUR][1000 genomes]
rs57505872	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57756929	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58530046	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58566866	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60982520	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61900122	1.00[ASN][1000 genomes]
rs6592673	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592681	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592695	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6592696	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7102199	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103880	0.86[AFR][1000 genomes]
rs7103881	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7104807	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105271	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105797	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7106009	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7106029	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113911	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7114082	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114367	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115053	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7118970	1.00[EUR][1000 genomes]
rs7119233	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489514	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489576	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489579	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489582	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489585	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489594	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73491425	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73491456	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73507813	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73507817	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73507826	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73507833	1.00[EUR][1000 genomes]
rs7932066	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932449	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933347	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943089	1.00[EUR][1000 genomes]
rs7943364	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943396	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7945781	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9704887	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9919623	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76618200-76637600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:76628000-76637600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:76630000-76633400	Enhancers	Stomach Mucosa	stomach
4	chr11:76630200-76643400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:76630200-76645600	Weak transcription	Fetal Brain Female	brain
6	chr11:76630600-76643200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:76631200-76631800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:76631200-76632000	Enhancers	Fetal Intestine Large	intestine
9	chr11:76631200-76632000	Enhancers	Pancreas	Pancrea
10	chr11:76631400-76632000	Enhancers	Liver	Liver
11	chr11:76631400-76632200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr11:76631400-76633000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:76631400-76637400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr11:76631400-76637600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:76631400-76643200	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr11:76631400-76643400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:76631400-76643600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr11:76631400-76644600	Weak transcription	Small Intestine	intestine
19	chr11:76631400-76644800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr11:76631400-76645000	Weak transcription	Fetal Stomach	stomach
21	chr11:76631400-76645600	Weak transcription	Esophagus	oesophagus
22	chr11:76631400-76645600	Weak transcription	Placenta	Placenta
23	chr11:76631400-76645600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr11:76631400-76645800	Weak transcription	Fetal Lung	lung
25	chr11:76631400-76646000	Weak transcription	HUVEC	blood vessel
26	chr11:76631400-76649000	Weak transcription	Aorta	Aorta
27	chr11:76631400-76655000	Weak transcription	Primary B cells from cord blood	blood
28	chr11:76631400-76688400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:76631600-76631800	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr11:76631600-76632200	Enhancers	Duodenum Mucosa	Duodenum
31	chr11:76631600-76633000	Enhancers	Fetal Intestine Small	intestine
32	chr11:76631600-76633000	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr11:76631600-76634000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:76631600-76637600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:76631600-76637600	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr11:76631600-76643000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:76631600-76643000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:76631600-76643000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:76631600-76643000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:76631600-76643000	Weak transcription	Adipose Nuclei	Adipose
41	chr11:76631600-76643200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr11:76631600-76643200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:76631600-76643200	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr11:76631600-76643200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr11:76631600-76643200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:76631600-76643200	Weak transcription	HMEC	breast
47	chr11:76631600-76643400	Weak transcription	Dnd41	blood
48	chr11:76631600-76643600	Weak transcription	A549	lung
49	chr11:76631600-76643600	Weak transcription	NHDF-Ad	bronchial
50	chr11:76631600-76643800	Weak transcription	NHEK	skin

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