Variant report

Variant	rs73489514
Chromosome Location	chr11:76647742-76647743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1062170	1.00[EUR][1000 genomes]
rs17135310	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17135319	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17160169	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2187498	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4341568	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4597093	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57505872	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57756929	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58530046	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58566866	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60982520	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592673	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592681	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592695	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6592696	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7102199	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103880	0.83[AFR][1000 genomes]
rs7103881	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7104807	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105271	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105797	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7106009	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7106029	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113911	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7114082	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114367	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115053	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7118970	1.00[EUR][1000 genomes]
rs7119233	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489594	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73491425	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73491456	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73507813	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73507817	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73507826	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73507833	1.00[EUR][1000 genomes]
rs7924330	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932066	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932449	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933347	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943089	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7943364	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943396	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7945781	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9704887	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9919623	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519700	chr11:76637651-76709407	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76631400-76649000	Weak transcription	Aorta	Aorta
2	chr11:76631400-76655000	Weak transcription	Primary B cells from cord blood	blood
3	chr11:76631400-76688400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:76631600-76657000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:76631600-76670200	Weak transcription	Left Ventricle	heart
6	chr11:76631600-76671600	Weak transcription	Ovary	ovary
7	chr11:76638800-76651600	Weak transcription	Colonic Mucosa	Colon
8	chr11:76644000-76666400	Weak transcription	NHEK	skin
9	chr11:76644200-76653000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:76645800-76649000	Weak transcription	Fetal Stomach	stomach
11	chr11:76645800-76683800	Weak transcription	Esophagus	oesophagus
12	chr11:76646000-76656600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:76646200-76649400	Weak transcription	Brain Substantia Nigra	brain
14	chr11:76646200-76650200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr11:76646200-76670600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr11:76646600-76651000	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr11:76646600-76655000	Weak transcription	Primary T cells from cord blood	blood
18	chr11:76646600-76688000	Weak transcription	HMEC	breast
19	chr11:76646800-76656600	Weak transcription	Lung	lung
20	chr11:76647000-76647800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr11:76647000-76649400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:76647000-76649800	Weak transcription	HUVEC	blood vessel
23	chr11:76647000-76670200	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr11:76647200-76648400	Weak transcription	Adipose Nuclei	Adipose
25	chr11:76647200-76649000	Weak transcription	Fetal Intestine Small	intestine
26	chr11:76647200-76649000	Weak transcription	HepG2	liver
27	chr11:76647200-76649200	Weak transcription	Placenta	Placenta
28	chr11:76647200-76651400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr11:76647200-76651600	Weak transcription	Brain Angular Gyrus	brain
30	chr11:76647200-76651800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr11:76647200-76651800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:76647200-76652600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr11:76647200-76653200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:76647200-76653600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:76647200-76654200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr11:76647200-76655200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr11:76647200-76655200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr11:76647200-76655400	Weak transcription	Primary hematopoietic stem cells	blood
39	chr11:76647200-76655400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr11:76647200-76671600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:76647200-76673800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:76647200-76674800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:76647400-76648200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr11:76647400-76649600	Weak transcription	NHDF-Ad	bronchial
45	chr11:76647400-76649800	Weak transcription	A549	lung
46	chr11:76647400-76651800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:76647400-76653000	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:76647400-76670000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:76647600-76648400	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr11:76647600-76649000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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