Variant report

Variant	rs58530046
Chromosome Location	chr11:76655590-76655591
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76653898..76657828-chr11:76664691..76666325,3	K562	blood:
2	chr11:76631230..76632979-chr11:76654933..76656513,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1062170	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17135310	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17135319	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17160169	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2187498	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4341568	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4597093	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57505872	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57756929	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58566866	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60982520	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592673	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6592681	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592695	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592696	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102199	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103881	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7104807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105271	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105797	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7106009	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7106029	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7113911	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114082	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114367	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115053	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7118970	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7119233	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73489514	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489576	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489579	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489582	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489585	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489594	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73491425	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73491456	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73507813	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73507817	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73507826	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73507833	1.00[EUR][1000 genomes]
rs7924330	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932066	1.00[EUR][1000 genomes]
rs7932449	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7933347	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943089	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943396	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7945781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9704887	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9919623	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519700	chr11:76637651-76709407	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76631400-76688400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:76631600-76657000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:76631600-76670200	Weak transcription	Left Ventricle	heart
4	chr11:76631600-76671600	Weak transcription	Ovary	ovary
5	chr11:76644000-76666400	Weak transcription	NHEK	skin
6	chr11:76645800-76683800	Weak transcription	Esophagus	oesophagus
7	chr11:76646000-76656600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:76646200-76670600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:76646600-76688000	Weak transcription	HMEC	breast
10	chr11:76646800-76656600	Weak transcription	Lung	lung
11	chr11:76647000-76670200	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr11:76647200-76671600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:76647200-76673800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:76647200-76674800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:76647400-76670000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:76648400-76671600	Weak transcription	Spleen	Spleen
17	chr11:76649600-76656400	Weak transcription	Fetal Stomach	stomach
18	chr11:76649600-76669600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr11:76649600-76672000	Weak transcription	Aorta	Aorta
20	chr11:76650000-76669600	Weak transcription	Adipose Nuclei	Adipose
21	chr11:76650600-76657400	Weak transcription	Stomach Mucosa	stomach
22	chr11:76650600-76670000	Weak transcription	Placenta	Placenta
23	chr11:76650600-76681200	Weak transcription	Brain Substantia Nigra	brain
24	chr11:76651000-76656400	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr11:76654000-76656000	Weak transcription	Brain Angular Gyrus	brain
26	chr11:76654000-76656800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:76655000-76655800	ZNF genes & repeats	Primary B cells from cord blood	blood
28	chr11:76655000-76655800	ZNF genes & repeats	Primary T cells from cord blood	blood
29	chr11:76655200-76655800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:76655200-76655800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
31	chr11:76655400-76655600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
32	chr11:76655400-76656000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
33	chr11:76655400-76656800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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