Variant report

Variant	rs7119233
Chromosome Location	chr11:76565943-76565944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76558871..76560605-chr11:76564963..76566676,2	K562	blood:
2	chr11:76564296..76568094-chr11:76569761..76574800,8	MCF-7	breast:
3	chr11:76562890..76566104-chr11:76570759..76573075,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1062170	1.00[EUR][1000 genomes]
rs17135310	1.00[EUR][1000 genomes]
rs17135319	1.00[EUR][1000 genomes]
rs17160169	1.00[EUR][1000 genomes]
rs2187498	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4341568	1.00[EUR][1000 genomes]
rs4597093	1.00[EUR][1000 genomes]
rs57505872	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57756929	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58530046	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58566866	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60982520	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6592673	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592681	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592695	1.00[EUR][1000 genomes]
rs6592696	1.00[EUR][1000 genomes]
rs7102199	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103880	0.82[AFR][1000 genomes]
rs7103881	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7104807	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7105271	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105797	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7106009	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7106029	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113911	1.00[EUR][1000 genomes]
rs7114082	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7114367	1.00[EUR][1000 genomes]
rs7115053	1.00[EUR][1000 genomes]
rs7118970	1.00[EUR][1000 genomes]
rs73489514	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489576	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489579	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489582	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489585	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489594	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73491425	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73491456	1.00[EUR][1000 genomes]
rs73507813	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73507817	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73507826	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73507833	1.00[EUR][1000 genomes]
rs7924330	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932066	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932449	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7933347	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943089	1.00[EUR][1000 genomes]
rs7943364	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7943396	1.00[EUR][1000 genomes]
rs7945781	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9704887	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9919623	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76549600-76570800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:76549800-76572000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:76550600-76566400	Weak transcription	Lung	lung
4	chr11:76562000-76567200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:76562000-76571200	Weak transcription	Adipose Nuclei	Adipose
6	chr11:76562000-76571400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:76562200-76570600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:76562200-76571000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:76562400-76569800	Weak transcription	Placenta	Placenta
10	chr11:76562600-76567400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:76563200-76566400	Weak transcription	Thymus	Thymus
12	chr11:76563400-76566800	Weak transcription	GM12878-XiMat	blood
13	chr11:76563800-76566200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:76564000-76567400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:76565200-76568200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr11:76565400-76566000	Enhancers	K562	blood
17	chr11:76565400-76566600	Enhancers	HMEC	breast
18	chr11:76565400-76571400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr11:76565600-76566000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:76565600-76566200	Enhancers	NHEK	skin
21	chr11:76565600-76566600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:76565600-76566800	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr11:76565800-76566000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:76565800-76566000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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