Variant report

Variant	rs73507813
Chromosome Location	chr11:76578920-76578921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76571772..76574183-chr11:76576104..76580771,5	MCF-7	breast:
2	chr11:76570667..76575236-chr11:76577091..76581916,10	K562	blood:
3	chr11:76493082..76494588-chr11:76578370..76580407,2	MCF-7	breast:
4	chr11:76570944..76572930-chr11:76578208..76580410,2	MCF-7	breast:
5	chr11:76577709..76580279-chr11:76585718..76587979,2	K562	blood:

Variant related genes	Relation type
ENSG00000255100	Chromatin interaction
ENSG00000182704	Chromatin interaction
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1062170	1.00[EUR][1000 genomes]
rs17135310	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17135319	1.00[EUR][1000 genomes]
rs17160169	1.00[EUR][1000 genomes]
rs2187498	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4341568	1.00[EUR][1000 genomes]
rs4597093	1.00[EUR][1000 genomes]
rs57505872	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57756929	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58530046	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58566866	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60982520	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6592673	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592681	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592695	1.00[EUR][1000 genomes]
rs6592696	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7102199	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103880	0.86[AFR][1000 genomes]
rs7103881	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7104807	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7105271	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105797	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7106009	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7106029	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113911	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7114082	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7114367	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7115053	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7118970	1.00[EUR][1000 genomes]
rs7119233	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489514	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489576	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489579	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489582	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489585	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73489594	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73491425	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73491456	1.00[EUR][1000 genomes]
rs73507817	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73507826	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73507833	1.00[EUR][1000 genomes]
rs7924330	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932066	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932449	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7933347	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943089	1.00[EUR][1000 genomes]
rs7943364	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7943396	1.00[EUR][1000 genomes]
rs7945781	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9704887	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9919623	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76572800-76579600	Weak transcription	Ovary	ovary
2	chr11:76572800-76596400	Weak transcription	Small Intestine	intestine
3	chr11:76573000-76579200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:76573000-76579400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:76573000-76579600	Weak transcription	Lung	lung
6	chr11:76573000-76579800	Weak transcription	Gastric	stomach
7	chr11:76573000-76581800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr11:76573000-76582000	Weak transcription	HSMM	muscle
9	chr11:76573000-76582200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr11:76573000-76583000	Weak transcription	Fetal Stomach	stomach
11	chr11:76573000-76583600	Weak transcription	Esophagus	oesophagus
12	chr11:76573200-76579400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:76573200-76580000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:76573200-76581400	Weak transcription	Fetal Brain Male	brain
15	chr11:76573200-76581800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:76573200-76582000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:76573200-76583000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:76573200-76583200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr11:76573200-76583600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr11:76573200-76591600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:76573200-76596600	Weak transcription	Right Ventricle	heart
22	chr11:76573200-76600400	Weak transcription	Primary T cells from cord blood	blood
23	chr11:76573200-76601400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr11:76573400-76579000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:76573400-76579000	Weak transcription	Fetal Brain Female	brain
26	chr11:76573400-76579400	Weak transcription	Fetal Heart	heart
27	chr11:76573400-76579600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:76573400-76579600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:76573400-76579600	Weak transcription	Brain Germinal Matrix	brain
30	chr11:76573400-76579600	Weak transcription	Colonic Mucosa	Colon
31	chr11:76573400-76579600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:76573400-76581200	Weak transcription	Fetal Lung	lung
33	chr11:76573400-76581400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr11:76573400-76582200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr11:76573400-76582200	Weak transcription	Liver	Liver
36	chr11:76573400-76582600	Weak transcription	Fetal Intestine Large	intestine
37	chr11:76573400-76591400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:76573600-76579000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr11:76573600-76579400	Weak transcription	A549	lung
40	chr11:76573600-76579600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr11:76573600-76581000	Weak transcription	Fetal Intestine Small	intestine
42	chr11:76573600-76587600	Weak transcription	Hela-S3	cervix
43	chr11:76573600-76588600	Weak transcription	HUVEC	blood vessel
44	chr11:76573600-76591000	Weak transcription	NHDF-Ad	bronchial
45	chr11:76573600-76591400	Weak transcription	Left Ventricle	heart
46	chr11:76573800-76583000	Weak transcription	Thymus	Thymus
47	chr11:76573800-76591000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr11:76574200-76599800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr11:76574400-76579000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr11:76574600-76579600	Weak transcription	Brain Cingulate Gyrus	brain

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