Variant report

Variant	rs61901400
Chromosome Location	chr11:120590901-120590902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:120588756..120591317-chr11:120596716..120599050,2	K562	blood:
2	chr11:120586188..120587926-chr11:120590169..120592133,3	K562	blood:
3	chr11:120584973..120587715-chr11:120590633..120593353,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10892613	0.81[ASN][1000 genomes]
rs10892614	0.81[ASN][1000 genomes]
rs10892615	0.81[ASN][1000 genomes]
rs12272864	0.81[ASN][1000 genomes]
rs12273984	0.85[ASN][1000 genomes]
rs12278795	0.85[ASN][1000 genomes]
rs12280296	0.84[ASN][1000 genomes]
rs12286467	0.81[ASN][1000 genomes]
rs12288261	0.86[ASN][1000 genomes]
rs12291927	0.85[ASN][1000 genomes]
rs12293393	0.86[ASN][1000 genomes]
rs2846109	0.94[ASN][1000 genomes]
rs58356578	0.82[ASN][1000 genomes]
rs61901360	0.84[ASN][1000 genomes]
rs61901361	0.85[ASN][1000 genomes]
rs61901362	0.85[ASN][1000 genomes]
rs61901364	0.85[ASN][1000 genomes]
rs61901366	0.86[ASN][1000 genomes]
rs61901367	0.86[ASN][1000 genomes]
rs61901368	0.86[ASN][1000 genomes]
rs61901369	0.86[ASN][1000 genomes]
rs61901371	0.86[ASN][1000 genomes]
rs61901372	0.86[ASN][1000 genomes]
rs61901373	0.86[ASN][1000 genomes]
rs61901374	0.86[ASN][1000 genomes]
rs61901375	0.86[ASN][1000 genomes]
rs61901377	0.85[ASN][1000 genomes]
rs61901382	0.86[ASN][1000 genomes]
rs61902686	0.82[ASN][1000 genomes]
rs61902687	0.82[ASN][1000 genomes]
rs6589834	0.84[ASN][1000 genomes]
rs7944756	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3693392	chr11:120549745-120628012	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1041465	chr11:120582595-120630114	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv541180	chr11:120582595-120630114	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120586400-120593200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:120587800-120591000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:120588400-120591000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:120588400-120591000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:120588800-120591000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr11:120589200-120591000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:120589200-120593200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:120589400-120591000	Enhancers	Ovary	ovary
9	chr11:120589400-120593600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:120589600-120591400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:120590000-120591000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:120590200-120591200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr11:120590400-120593200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:120590600-120593600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:120590800-120591000	Enhancers	Esophagus	oesophagus
16	chr11:120590800-120591200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr11:120590800-120591200	Enhancers	Pancreas	Pancrea

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