Variant report

Variant	rs61903133
Chromosome Location	chr11:121249199-121249200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11826929	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12798486	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12805903	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2512090	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297488	1.00[ASN][1000 genomes]
rs34172324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34266697	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34561827	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34571866	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34687160	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35269930	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35556203	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36176150	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4565910	0.81[AMR][1000 genomes]
rs55636130	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56217499	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60870189	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61903106	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61903107	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61903131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129394	0.81[AMR][1000 genomes]
rs71486380	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7928372	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121230800-121249800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:121239600-121259200	Weak transcription	Psoas Muscle	Psoas
3	chr11:121242600-121251200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:121243000-121251000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr11:121244200-121249800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr11:121244200-121251200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr11:121244800-121260200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:121245000-121249600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:121245000-121249600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:121245600-121251000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr11:121246200-121249600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:121246200-121250200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:121246400-121249600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:121246400-121249600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:121246400-121250800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr11:121246600-121249600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:121246800-121251200	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr11:121247000-121251200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr11:121247000-121251200	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr11:121247200-121249600	Weak transcription	Fetal Thymus	thymus
21	chr11:121247800-121250200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:121248200-121251200	Enhancers	Primary T cells from cord blood	blood
23	chr11:121248400-121249200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:121248400-121249400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:121248400-121250400	Enhancers	Dnd41	blood
26	chr11:121248400-121250800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr11:121248800-121250000	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr11:121248800-121250800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:121248800-121251200	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr11:121249000-121250000	Enhancers	Primary hematopoietic stem cells	blood
31	chr11:121249000-121250600	Enhancers	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links