Variant report

Variant	rs61903142
Chromosome Location	chr11:106539777-106539778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10502075	0.88[EUR][1000 genomes]
rs10890565	0.86[EUR][1000 genomes]
rs11211852	0.90[EUR][1000 genomes]
rs11211853	0.89[EUR][1000 genomes]
rs11211854	0.88[EUR][1000 genomes]
rs11211855	0.87[EUR][1000 genomes]
rs11211856	0.90[EUR][1000 genomes]
rs11211860	0.88[EUR][1000 genomes]
rs11211861	0.88[EUR][1000 genomes]
rs11211863	0.88[EUR][1000 genomes]
rs11211864	0.88[EUR][1000 genomes]
rs11211865	0.88[EUR][1000 genomes]
rs11211866	0.88[EUR][1000 genomes]
rs11211869	0.88[EUR][1000 genomes]
rs12360850	0.88[EUR][1000 genomes]
rs12362289	0.88[EUR][1000 genomes]
rs12365648	0.88[EUR][1000 genomes]
rs17563648	0.88[EUR][1000 genomes]
rs17563662	0.88[EUR][1000 genomes]
rs17649054	0.88[EUR][1000 genomes]
rs61903143	0.90[EUR][1000 genomes]
rs61903144	0.90[EUR][1000 genomes]
rs61903145	0.88[EUR][1000 genomes]
rs61903146	0.85[EUR][1000 genomes]
rs61903149	0.88[EUR][1000 genomes]
rs61903150	0.88[EUR][1000 genomes]
rs61903152	0.88[EUR][1000 genomes]
rs9645655	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898359	chr11:106523574-106656863	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv556228	chr11:106535709-106576657	Enhancers Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106539600-106540600	Weak transcription	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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