Variant report

Variant	rs61903846
Chromosome Location	chr11:86725804-86725805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86724901..86726524-chr11:86747306..86749627,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166575	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11606641	0.95[ASN][1000 genomes]
rs11822478	0.90[ASN][1000 genomes]
rs11824454	0.90[ASN][1000 genomes]
rs11825467	0.90[ASN][1000 genomes]
rs4471456	0.95[ASN][1000 genomes]
rs56338039	0.90[ASN][1000 genomes]
rs61903847	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61903848	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61904178	0.90[ASN][1000 genomes]
rs61904179	0.90[ASN][1000 genomes]
rs61904181	0.90[ASN][1000 genomes]
rs61904207	0.90[ASN][1000 genomes]
rs61906168	1.00[ASN][1000 genomes]
rs61906171	0.95[ASN][1000 genomes]
rs61906195	0.95[ASN][1000 genomes]
rs61906204	0.95[ASN][1000 genomes]
rs61906205	0.90[ASN][1000 genomes]
rs61906206	0.85[ASN][1000 genomes]
rs7941361	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950416	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86711200-86727400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:86723600-86726000	Enhancers	Fetal Stomach	stomach
3	chr11:86723800-86726000	Enhancers	Fetal Muscle Leg	muscle
4	chr11:86723800-86726200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:86724200-86726000	Enhancers	Adipose Nuclei	Adipose
6	chr11:86724400-86726000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:86725000-86730400	Weak transcription	Right Atrium	heart
8	chr11:86725600-86726200	Enhancers	Fetal Heart	heart
9	chr11:86725600-86726200	Enhancers	HepG2	liver
10	chr11:86725800-86730400	Weak transcription	Left Ventricle	heart
11	chr11:86725800-86730600	Weak transcription	Fetal Lung	lung

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