Variant report

Variant	rs7950416
Chromosome Location	chr11:86862333-86862334
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11234935	1.00[JPT][hapmap]
rs11234978	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11606641	0.85[ASN][1000 genomes]
rs11822478	1.00[ASN][1000 genomes]
rs11824454	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825467	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2847352	1.00[JPT][hapmap];0.94[AMR][1000 genomes]
rs34782550	0.94[AMR][1000 genomes]
rs34806361	0.94[AMR][1000 genomes]
rs4471456	0.85[ASN][1000 genomes]
rs4578415	1.00[JPT][hapmap]
rs476642	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs482944	1.00[JPT][hapmap];0.94[AMR][1000 genomes]
rs485113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs489073	1.00[YRI][hapmap]
rs493708	0.82[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs498059	0.82[CEU][hapmap];0.94[AMR][1000 genomes]
rs500725	1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs513938	1.00[JPT][hapmap]
rs520718	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs542279	0.82[CEU][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs545265	1.00[JPT][hapmap]
rs548076	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs556724	0.82[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56338039	1.00[ASN][1000 genomes]
rs570898	1.00[JPT][hapmap]
rs572253	1.00[JPT][hapmap]
rs578116	0.94[AMR][1000 genomes]
rs605658	1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs618159	0.82[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61903846	0.90[ASN][1000 genomes]
rs61903847	0.90[ASN][1000 genomes]
rs61903848	0.90[ASN][1000 genomes]
rs61904178	1.00[ASN][1000 genomes]
rs61904179	1.00[ASN][1000 genomes]
rs61904181	1.00[ASN][1000 genomes]
rs61904207	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61906168	0.90[ASN][1000 genomes]
rs61906171	0.85[ASN][1000 genomes]
rs61906195	0.95[ASN][1000 genomes]
rs61906204	0.95[ASN][1000 genomes]
rs61906205	1.00[ASN][1000 genomes]
rs61906206	0.95[ASN][1000 genomes]
rs631930	0.82[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs638771	1.00[JPT][hapmap]
rs654152	1.00[JPT][hapmap]
rs7941361	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv898058	chr11:86754948-86889284	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv898059	chr11:86754948-86949369	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	esv1844274	chr11:86776992-86872908	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1045057	chr11:86794670-87033779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv541121	chr11:86794670-87033779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv468777	chr11:86794856-86985581	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv555707	chr11:86794856-86985581	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv898060	chr11:86822077-86912633	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv420	chr11:86845328-86890111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv898061	chr11:86850483-86944982	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv468778	chr11:86850483-86974576	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv555708	chr11:86850483-86974576	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86809000-86876000	Weak transcription	Left Ventricle	heart
2	chr11:86836800-86877200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:86851200-86872600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:86853400-86862800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:86853400-86866600	Weak transcription	Right Atrium	heart
6	chr11:86855600-86865600	Weak transcription	Small Intestine	intestine
7	chr11:86856800-86862400	Weak transcription	Primary T cells from cord blood	blood
8	chr11:86860200-86863200	Enhancers	HepG2	liver
9	chr11:86860400-86862600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:86860600-86862600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:86860600-86862800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:86860600-86862800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:86860600-86866600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr11:86861400-86862600	Enhancers	HUVEC	blood vessel
15	chr11:86861400-86863200	Enhancers	Adipose Nuclei	Adipose
16	chr11:86861600-86862400	Enhancers	Osteobl	bone
17	chr11:86861800-86862600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:86862000-86862400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:86862000-86862600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr11:86862000-86863200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr11:86862200-86862600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:86862200-86867800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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