Variant report

Variant	rs11234935
Chromosome Location	chr11:86767716-86767717
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1026410	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10898592	0.95[AMR][1000 genomes]
rs10898598	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs11234908	0.87[EUR][1000 genomes]
rs11234913	0.87[EUR][1000 genomes]
rs11234914	0.87[EUR][1000 genomes]
rs11234915	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11234916	0.87[EUR][1000 genomes]
rs11234920	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11234921	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11234922	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11234926	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11234927	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234931	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234934	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234936	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234949	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11234975	1.00[CHB][hapmap]
rs11234979	1.00[CHB][hapmap]
rs11234981	1.00[CHB][hapmap]
rs12270428	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272440	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12273408	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12273779	1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12274647	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12278401	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12279443	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12282651	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12283115	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12283210	1.00[CHB][hapmap]
rs12285441	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12286127	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12286867	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12289216	1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12289267	1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12289978	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294843	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13377595	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17758940	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17759040	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17820632	0.82[EUR][1000 genomes]
rs17820908	1.00[CHB][hapmap]
rs41376049	0.87[EUR][1000 genomes]
rs4578415	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4594023	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs473996	1.00[CHB][hapmap]
rs477156	1.00[CHB][hapmap]
rs482450	1.00[CHB][hapmap]
rs502191	1.00[CHB][hapmap]
rs509485	1.00[CHB][hapmap]
rs554757	1.00[CHB][hapmap]
rs55724663	0.87[EUR][1000 genomes]
rs55790509	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56028118	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56117749	0.87[EUR][1000 genomes]
rs574378	1.00[CHB][hapmap]
rs574417	1.00[CHB][hapmap]
rs575496	1.00[CHB][hapmap]
rs576532	1.00[CHB][hapmap]
rs57664476	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57933396	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs589193	1.00[CHB][hapmap]
rs591818	1.00[CHB][hapmap]
rs605456	1.00[CHB][hapmap]
rs60711353	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61119044	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61904170	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61904173	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61904180	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61906164	0.87[EUR][1000 genomes]
rs61906166	0.87[EUR][1000 genomes]
rs61906167	0.89[EUR][1000 genomes]
rs61906170	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61906173	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61906192	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61906193	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61906194	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61906203	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61906207	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs633629	1.00[CHB][hapmap]
rs676503	1.00[CHB][hapmap]
rs7947757	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7950416	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv898058	chr11:86754948-86889284	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv898059	chr11:86754948-86949369	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86750800-86780600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr11:86750800-86782000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr11:86750800-86787400	Weak transcription	A549	lung
4	chr11:86751000-86786800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:86751000-86787400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:86751200-86785600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:86751400-86767800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:86751400-86786400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:86751600-86787000	Weak transcription	Aorta	Aorta
10	chr11:86752000-86768800	Weak transcription	Ovary	ovary
11	chr11:86752000-86768800	Weak transcription	Psoas Muscle	Psoas
12	chr11:86752200-86768800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:86755200-86779000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:86755400-86780200	Weak transcription	Adipose Nuclei	Adipose
15	chr11:86755400-86780400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr11:86755600-86768600	Weak transcription	Liver	Liver
17	chr11:86755800-86770200	Weak transcription	Fetal Stomach	stomach
18	chr11:86756400-86782800	Weak transcription	Fetal Intestine Small	intestine
19	chr11:86756800-86768400	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:86756800-86772400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:86758200-86768200	Weak transcription	HepG2	liver
22	chr11:86758200-86768800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:86758200-86778600	Weak transcription	K562	blood
24	chr11:86758200-86780000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr11:86758200-86780400	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:86758200-86783200	Weak transcription	Primary T cells from cord blood	blood
27	chr11:86758200-86786400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:86758400-86768200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr11:86758400-86772600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:86758400-86776000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:86758400-86778800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:86766400-86769400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:86767400-86771000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:86767400-86779000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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