Variant report

Variant	rs56028118
Chromosome Location	chr11:86750109-86750110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86741218..86743533-chr11:86749277..86751879,2	MCF-7	breast:
2	chr11:86749278..86752197-chr11:86764776..86767404,2	K562	blood:
3	chr11:86664827..86670422-chr11:86747541..86750601,9	MCF-7	breast:
4	chr11:86665343..86667808-chr11:86749695..86751582,2	K562	blood:

Variant related genes	Relation type
ENSG00000174804	Chromatin interaction
ENSG00000246523	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1026410	0.81[AMR][1000 genomes]
rs10898592	0.86[AMR][1000 genomes]
rs11234908	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11234913	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11234914	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11234915	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11234916	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11234920	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11234921	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11234922	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11234926	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234927	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11234931	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11234934	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11234935	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11234936	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11234949	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12270428	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12272440	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12273408	0.81[AMR][1000 genomes]
rs12273779	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12274647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12278401	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12282651	0.81[AMR][1000 genomes]
rs12283115	0.81[AMR][1000 genomes]
rs12285441	0.81[AMR][1000 genomes]
rs12286127	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12286867	0.81[AMR][1000 genomes]
rs12289216	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12289267	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12289978	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12294843	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13377595	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17758940	0.81[AMR][1000 genomes]
rs17820632	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs41376049	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4578415	0.81[AMR][1000 genomes]
rs4594023	0.81[AMR][1000 genomes]
rs55724663	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55790509	0.81[AMR][1000 genomes]
rs56117749	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57664476	0.81[AMR][1000 genomes]
rs57933396	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60711353	0.81[AMR][1000 genomes]
rs61119044	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61904170	0.81[AMR][1000 genomes]
rs61904173	0.81[AMR][1000 genomes]
rs61906164	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61906166	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61906167	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61906170	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61906173	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61906192	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61906193	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61906194	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61906203	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61906207	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7947757	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86748000-86750200	Active TSS	Fetal Kidney	kidney
2	chr11:86748000-86750400	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr11:86748000-86750400	Active TSS	Fetal Intestine Small	intestine
4	chr11:86748000-86750600	Active TSS	Brain Cingulate Gyrus	brain
5	chr11:86748000-86750800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:86748000-86751000	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr11:86748200-86750200	Active TSS	HSMMtube	muscle
8	chr11:86748200-86750400	Active TSS	Left Ventricle	heart
9	chr11:86748200-86750800	Active TSS	Psoas Muscle	Psoas
10	chr11:86748200-86751000	Active TSS	Ovary	ovary
11	chr11:86748200-86751400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:86748400-86750200	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr11:86748400-86750200	Active TSS	Colon Smooth Muscle	Colon
14	chr11:86748400-86750200	Active TSS	HSMM	muscle
15	chr11:86748400-86750600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:86748400-86750600	Active TSS	H9 Cell Line	embryonic stem cell
17	chr11:86748400-86750600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:86748400-86751200	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr11:86748400-86751200	Active TSS	Aorta	Aorta
20	chr11:86748400-86751800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:86748400-86752000	Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr11:86748600-86750200	Active TSS	H1 Cell Line	embryonic stem cell
23	chr11:86748600-86750200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:86748600-86750200	Active TSS	Brain Substantia Nigra	brain
25	chr11:86748600-86750400	Active TSS	K562	blood
26	chr11:86748600-86750400	Active TSS	NHDF-Ad	bronchial
27	chr11:86748600-86750600	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr11:86748600-86750800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:86748600-86751000	Active TSS	NHLF	lung
30	chr11:86748800-86750200	Active TSS	HMEC	breast
31	chr11:86748800-86750400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:86749000-86750200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:86749000-86750200	Active TSS	Fetal Brain Male	brain
34	chr11:86749000-86750400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:86749000-86751000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:86749200-86751400	Active TSS	Right Atrium	heart
37	chr11:86749400-86750200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:86749400-86750200	Flanking Active TSS	Osteobl	bone
39	chr11:86749400-86750400	Flanking Active TSS	Primary T cells from cord blood	blood
40	chr11:86749400-86752200	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr11:86749600-86750400	Enhancers	Primary B cells from peripheral blood	blood
42	chr11:86749600-86750400	Flanking Active TSS	Brain Hippocampus Middle	brain
43	chr11:86749600-86750400	Flanking Active TSS	Fetal Lung	lung
44	chr11:86749600-86750400	Flanking Active TSS	NHEK	skin
45	chr11:86749600-86750600	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr11:86749600-86750600	Flanking Active TSS	Liver	Liver
47	chr11:86749600-86750600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr11:86749600-86750600	Enhancers	Small Intestine	intestine
49	chr11:86749600-86750600	Flanking Active TSS	Stomach Smooth Muscle	stomach
50	chr11:86749600-86750800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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