Variant report

Variant	rs55724663
Chromosome Location	chr11:86730339-86730340
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86729696..86732227-chr11:86739805..86742002,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11234908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11234913	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11234914	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11234915	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11234916	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11234920	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11234921	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11234922	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11234926	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11234927	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11234931	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11234934	0.87[EUR][1000 genomes]
rs11234935	0.87[EUR][1000 genomes]
rs11234936	0.87[EUR][1000 genomes]
rs12270428	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12272440	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12273779	0.84[EUR][1000 genomes]
rs12274647	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12278401	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12286127	0.83[EUR][1000 genomes]
rs12289216	0.84[EUR][1000 genomes]
rs12289267	0.84[EUR][1000 genomes]
rs12289978	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12294843	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13377595	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17820632	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41376049	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56028118	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56117749	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57933396	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61119044	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61906164	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61906166	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61906167	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61906170	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61906173	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61906192	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61906193	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61906194	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61906203	0.85[EUR][1000 genomes]
rs61906207	0.84[EUR][1000 genomes]
rs7947757	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86725000-86730400	Weak transcription	Right Atrium	heart
2	chr11:86725800-86730400	Weak transcription	Left Ventricle	heart
3	chr11:86725800-86730600	Weak transcription	Fetal Lung	lung
4	chr11:86726000-86730400	Weak transcription	Adipose Nuclei	Adipose
5	chr11:86726000-86730400	Weak transcription	Fetal Stomach	stomach
6	chr11:86726000-86730600	Weak transcription	Fetal Muscle Leg	muscle
7	chr11:86726000-86731000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:86726200-86730600	Weak transcription	Fetal Heart	heart
9	chr11:86726200-86731400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:86728000-86731000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:86728000-86732800	Enhancers	HepG2	liver
12	chr11:86729200-86730800	Enhancers	Lung	lung
13	chr11:86729800-86730600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:86729800-86730600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:86730200-86730400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:86730200-86730600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
17	chr11:86730200-86731000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:86730200-86732000	Enhancers	HUVEC	blood vessel
19	chr11:86730200-86732600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links