Variant report

Variant	rs61904324
Chromosome Location	chr11:86050608-86050609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11234627	0.81[EUR][1000 genomes]
rs2847469	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2847472	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs291198	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs291199	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9666855	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014200-86052000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:86014200-86055400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:86014200-86057400	Weak transcription	Aorta	Aorta
4	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
5	chr11:86014600-86066400	Weak transcription	Fetal Kidney	kidney
6	chr11:86014800-86058600	Weak transcription	NHLF	lung
7	chr11:86015000-86061000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:86015200-86051400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:86015400-86059600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr11:86020400-86057200	Weak transcription	Small Intestine	intestine
11	chr11:86022000-86061000	Weak transcription	Esophagus	oesophagus
12	chr11:86023800-86061200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:86024200-86052200	Weak transcription	Colonic Mucosa	Colon
14	chr11:86024600-86057400	Weak transcription	Pancreas	Pancrea
15	chr11:86025000-86061600	Weak transcription	Psoas Muscle	Psoas
16	chr11:86025200-86057800	Weak transcription	HepG2	liver
17	chr11:86028400-86059200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr11:86029600-86050800	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr11:86032600-86057600	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:86033400-86066400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:86033600-86057000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:86035400-86066600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:86035600-86058800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr11:86038000-86059800	Weak transcription	NH-A	brain
25	chr11:86038600-86050800	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr11:86040800-86060800	Weak transcription	Brain Angular Gyrus	brain
27	chr11:86042000-86057600	Weak transcription	NHDF-Ad	bronchial
28	chr11:86042200-86052800	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr11:86043800-86050800	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr11:86045600-86051200	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr11:86045600-86051200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr11:86045800-86050800	Strong transcription	Primary B cells from cord blood	blood
33	chr11:86047400-86051400	Strong transcription	Fetal Thymus	thymus
34	chr11:86047600-86050800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:86047600-86057400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:86047600-86059400	Weak transcription	NHEK	skin
37	chr11:86047800-86051200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:86047800-86067800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr11:86048000-86050800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:86048000-86051400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr11:86048000-86051400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:86048400-86050800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:86048400-86070200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:86048600-86050800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:86048800-86057400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:86049000-86051400	Strong transcription	Fetal Lung	lung
47	chr11:86049400-86057600	Weak transcription	Primary hematopoietic stem cells	blood
48	chr11:86049400-86067800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr11:86049600-86056000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr11:86049600-86057400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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