Variant report

Variant	rs61910480
Chromosome Location	chr11:100593516-100593517
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11224405	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824393	1.00[ASN][1000 genomes]
rs11824432	1.00[ASN][1000 genomes]
rs12278242	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12284151	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291857	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12295008	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17095405	0.82[ASN][1000 genomes]
rs17095409	0.82[ASN][1000 genomes]
rs2088953	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2298610	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2298611	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2407750	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4087602	0.88[ASN][1000 genomes]
rs4469852	0.82[ASN][1000 genomes]
rs4517481	0.82[ASN][1000 genomes]
rs4753983	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58727919	0.82[ASN][1000 genomes]
rs60708905	0.82[ASN][1000 genomes]
rs61472500	0.83[ASN][1000 genomes]
rs61890760	0.82[ASN][1000 genomes]
rs61892334	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs61892352	0.82[ASN][1000 genomes]
rs61892355	0.82[ASN][1000 genomes]
rs61908744	0.83[ASN][1000 genomes]
rs61908745	0.83[ASN][1000 genomes]
rs61910476	0.94[ASN][1000 genomes]
rs61910478	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61910505	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61910508	1.00[ASN][1000 genomes]
rs6590818	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116153	0.82[ASN][1000 genomes]
rs7117515	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7126015	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126324	0.82[ASN][1000 genomes]
rs7129917	0.85[ASN][1000 genomes]
rs7130855	0.82[ASN][1000 genomes]
rs73003836	0.88[ASN][1000 genomes]
rs73005729	0.82[ASN][1000 genomes]
rs7945336	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7945656	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7947761	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053430	chr11:99888390-100629136	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1042067	chr11:99889697-100629136	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1037689	chr11:99895378-100624599	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1040942	chr11:99895378-100629136	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1039852	chr11:99901695-100610533	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv541152	chr11:99901695-100610533	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1045190	chr11:99913193-100627395	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv541153	chr11:99913193-100627395	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv529454	chr11:99913394-100627255	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv520995	chr11:100163957-100681211	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv1043022	chr11:100387466-100610533	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv832246	chr11:100426725-100606957	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv898327	chr11:100569021-100631075	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100590600-100596600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:100590800-100597400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:100590800-100609600	Weak transcription	Fetal Intestine Small	intestine
4	chr11:100590800-100611000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:100591000-100593800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:100591000-100594400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:100591000-100596800	Weak transcription	Fetal Heart	heart
8	chr11:100591000-100597000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:100591000-100597400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:100591000-100597600	Weak transcription	Left Ventricle	heart
11	chr11:100591000-100598000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:100591000-100611000	Weak transcription	NHLF	lung
13	chr11:100591000-100611200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:100591200-100594400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:100591200-100596800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:100592000-100594400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:100592000-100594400	Weak transcription	A549	lung
18	chr11:100592000-100596800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:100592200-100593600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:100592200-100596800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:100592200-100597000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr11:100592600-100596800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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