Variant report

Variant	rs61910505
Chromosome Location	chr11:100612604-100612605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11224405	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824393	1.00[ASN][1000 genomes]
rs11824432	1.00[ASN][1000 genomes]
rs12278242	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12284151	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291857	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12295008	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17095405	0.82[ASN][1000 genomes]
rs17095409	0.82[ASN][1000 genomes]
rs2088953	0.82[ASN][1000 genomes]
rs2298610	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2298611	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2407750	0.82[ASN][1000 genomes]
rs4087602	0.88[ASN][1000 genomes]
rs4469852	0.82[ASN][1000 genomes]
rs4517481	0.82[ASN][1000 genomes]
rs4753983	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58727919	0.82[ASN][1000 genomes]
rs60708905	0.82[ASN][1000 genomes]
rs61472500	0.83[ASN][1000 genomes]
rs61890760	0.82[ASN][1000 genomes]
rs61892334	0.82[ASN][1000 genomes]
rs61892352	0.82[ASN][1000 genomes]
rs61892355	0.82[ASN][1000 genomes]
rs61908744	0.83[ASN][1000 genomes]
rs61908745	0.83[ASN][1000 genomes]
rs61910476	0.94[ASN][1000 genomes]
rs61910478	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61910480	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61910508	1.00[ASN][1000 genomes]
rs6590818	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116153	0.82[ASN][1000 genomes]
rs7117515	0.82[ASN][1000 genomes]
rs7126015	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126324	0.82[ASN][1000 genomes]
rs7129917	0.85[ASN][1000 genomes]
rs7130855	0.82[ASN][1000 genomes]
rs73003836	0.88[ASN][1000 genomes]
rs73005729	0.82[ASN][1000 genomes]
rs7945336	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7945656	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7947761	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053430	chr11:99888390-100629136	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1042067	chr11:99889697-100629136	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1037689	chr11:99895378-100624599	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1040942	chr11:99895378-100629136	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1045190	chr11:99913193-100627395	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv541153	chr11:99913193-100627395	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv529454	chr11:99913394-100627255	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv520995	chr11:100163957-100681211	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv898327	chr11:100569021-100631075	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100598800-100620000	Weak transcription	Gastric	stomach
2	chr11:100599800-100619800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:100605400-100614400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr11:100607400-100615600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:100608200-100613000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr11:100608200-100614800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr11:100609000-100613000	Enhancers	Liver	Liver
8	chr11:100609000-100613200	Enhancers	Fetal Kidney	kidney
9	chr11:100609000-100613600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:100609200-100612800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:100609400-100613400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr11:100609400-100613800	Enhancers	Fetal Heart	heart
13	chr11:100609600-100613000	Enhancers	Fetal Muscle Leg	muscle
14	chr11:100609600-100613600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr11:100610000-100612800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr11:100610000-100614200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr11:100610200-100613000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:100610200-100613000	Enhancers	Fetal Intestine Small	intestine
19	chr11:100610200-100614400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr11:100610200-100614800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:100610400-100613000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr11:100610400-100613000	Enhancers	Ovary	ovary
23	chr11:100610400-100613000	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr11:100610400-100613200	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr11:100610400-100613400	Enhancers	Adipose Nuclei	Adipose
26	chr11:100610600-100613000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:100610600-100613200	Enhancers	Colon Smooth Muscle	Colon
28	chr11:100610800-100613400	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr11:100611000-100612800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:100611000-100613200	Enhancers	Psoas Muscle	Psoas
31	chr11:100611000-100613800	Enhancers	NHLF	lung
32	chr11:100611200-100613400	Enhancers	Primary B cells from peripheral blood	blood
33	chr11:100611400-100612800	Enhancers	A549	lung
34	chr11:100611400-100613200	Enhancers	HSMMtube	muscle
35	chr11:100611400-100622800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:100611600-100613000	Weak transcription	Stomach Mucosa	stomach
37	chr11:100611600-100617000	Weak transcription	Fetal Stomach	stomach
38	chr11:100611600-100619600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr11:100611800-100612800	Weak transcription	NHDF-Ad	bronchial
40	chr11:100611800-100619600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:100612000-100612800	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr11:100612000-100613400	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr11:100612000-100613400	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr11:100612200-100612800	Flanking Active TSS	Primary B cells from cord blood	blood
45	chr11:100612200-100612800	Enhancers	Brain Hippocampus Middle	brain
46	chr11:100612200-100613000	Enhancers	Duodenum Mucosa	Duodenum
47	chr11:100612200-100613000	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr11:100612200-100619800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr11:100612200-100620000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr11:100612400-100612800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links