Variant report

Variant	rs61917701
Chromosome Location	chr11:51294210-51294211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 230 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10902292	0.80[AMR][1000 genomes]
rs10902293	0.80[AMR][1000 genomes]
rs11246418	0.80[AMR][1000 genomes]
rs11513130	0.80[AMR][1000 genomes]
rs11819794	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11822060	0.98[EUR][1000 genomes]
rs11823157	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11823645	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11824207	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11825250	1.00[AMR][1000 genomes]
rs11825549	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4261266	0.80[AMR][1000 genomes]
rs4268490	0.80[AMR][1000 genomes]
rs4523676	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4598651	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4606461	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55725147	0.90[EUR][1000 genomes]
rs55785523	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56022232	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56082714	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56310757	1.00[AMR][1000 genomes]
rs61917121	1.00[AMR][1000 genomes]
rs61917123	1.00[AMR][1000 genomes]
rs61917144	1.00[AMR][1000 genomes]
rs61917569	1.00[AMR][1000 genomes]
rs61917570	1.00[AMR][1000 genomes]
rs61917580	1.00[AMR][1000 genomes]
rs61917581	1.00[AMR][1000 genomes]
rs61917583	1.00[AMR][1000 genomes]
rs61917584	0.90[AMR][1000 genomes]
rs61917585	1.00[AMR][1000 genomes]
rs61917586	1.00[AMR][1000 genomes]
rs61917633	0.88[EUR][1000 genomes]
rs61917635	0.85[EUR][1000 genomes]
rs61917637	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61917638	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61917639	0.83[EUR][1000 genomes]
rs61917640	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61917641	0.88[EUR][1000 genomes]
rs61917642	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61917643	0.88[EUR][1000 genomes]
rs61917644	0.88[EUR][1000 genomes]
rs61917645	0.88[EUR][1000 genomes]
rs61917646	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61917647	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61917648	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61917690	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61917691	0.98[EUR][1000 genomes]
rs61917698	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61917699	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61917703	0.98[EUR][1000 genomes]
rs61917704	0.98[EUR][1000 genomes]
rs61917705	0.98[EUR][1000 genomes]
rs61917706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61917707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61917708	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61917710	0.98[EUR][1000 genomes]
rs61917724	0.95[EUR][1000 genomes]
rs61917725	0.98[EUR][1000 genomes]
rs61917726	0.98[EUR][1000 genomes]
rs61917727	0.98[EUR][1000 genomes]
rs61917728	0.98[EUR][1000 genomes]
rs61917730	0.98[EUR][1000 genomes]
rs61917731	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61917732	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61917755	0.95[EUR][1000 genomes]
rs61918788	0.90[EUR][1000 genomes]
rs61919082	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61919083	0.88[EUR][1000 genomes]
rs61919084	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61919085	0.88[EUR][1000 genomes]
rs61919086	0.93[EUR][1000 genomes]
rs61919087	0.93[EUR][1000 genomes]
rs61919088	0.93[EUR][1000 genomes]
rs61919089	0.93[EUR][1000 genomes]
rs61919091	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61919093	0.93[EUR][1000 genomes]
rs61919095	0.93[EUR][1000 genomes]
rs61919105	0.88[EUR][1000 genomes]
rs61919110	0.98[EUR][1000 genomes]
rs61919111	0.98[EUR][1000 genomes]
rs7120716	0.80[AMR][1000 genomes]
rs7293937	0.80[AMR][1000 genomes]
rs7294025	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7294028	0.88[EUR][1000 genomes]
rs7294190	0.80[AMR][1000 genomes]
rs7294235	0.80[AMR][1000 genomes]
rs8186135	0.93[EUR][1000 genomes]
rs8189017	0.90[EUR][1000 genomes]
rs8189074	1.00[AMR][1000 genomes]
rs8189077	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8189088	0.93[EUR][1000 genomes]
rs8189113	0.93[EUR][1000 genomes]
rs8189125	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8189129	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8189140	0.80[AMR][1000 genomes]
rs8189144	1.00[AMR][1000 genomes]
rs8189263	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8189378	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8189379	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8189388	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:129 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038456	chr11:50343830-51328785	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1037858	chr11:50343830-51337246	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1037616	chr11:50357044-51337246	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1036511	chr11:50382437-51328785	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1047158	chr11:50382437-51337246	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv897533	chr11:50386833-51385894	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1037231	chr11:50398202-51319588	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1051082	chr11:50398202-51337246	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1042370	chr11:50398202-51357233	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1047448	chr11:50401840-51319588	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1045612	chr11:50401840-51328785	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv897535	chr11:50405139-51314773	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1044241	chr11:50417549-51319588	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv1043205	chr11:50417549-51337246	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1054781	chr11:50417549-51375310	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv1036702	chr11:50417549-51377342	Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1047636	chr11:50417549-51410459	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv1040310	chr11:50430956-51319588	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv1046211	chr11:50430956-51337246	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv1039300	chr11:50430956-51377342	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	esv1812912	chr11:50440270-51372036	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv1046506	chr11:50446266-51357233	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv1037895	chr11:50458746-51319588	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	nsv1042119	chr11:50458746-51357233	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	nsv1037622	chr11:50458746-51377342	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	esv2829950	chr11:50461838-51372036	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	nsv1042773	chr11:50468978-51357233	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	nsv1044608	chr11:50472064-51328785	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
29	nsv1055045	chr11:50472064-51353318	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
30	nsv1039445	chr11:50472064-51357233	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
31	nsv1042173	chr11:50472064-51377342	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
32	nsv1039669	chr11:50472902-51328785	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
33	nsv897545	chr11:50474459-51385894	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
34	nsv1048057	chr11:50476268-51328785	Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
35	nsv1046902	chr11:50476268-51337246	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
36	esv1794527	chr11:50483935-51306854	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
37	nsv1038610	chr11:50501834-51319588	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
38	nsv1039560	chr11:50501834-51337246	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
39	esv1849785	chr11:50522307-51342126	Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
40	nsv897549	chr11:50522307-51385894	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
41	nsv897550	chr11:50522307-51412453	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
42	nsv897553	chr11:50551954-51385894	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
43	esv1809768	chr11:50566719-51426645	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
44	nsv1046843	chr11:50573214-51337246	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
45	nsv897559	chr11:50609542-51372036	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
46	nsv1042012	chr11:50611124-51337246	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
47	nsv1047965	chr11:50613401-51357233	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
48	nsv1046048	chr11:50637245-51564415	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
49	esv1836242	chr11:50642550-51446535	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
50	nsv1048333	chr11:50651567-51337246	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:51285800-51295600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:51286000-51309000	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr11:51291600-51298000	ZNF genes & repeats	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links