Variant report

Variant	rs11825250
Chromosome Location	chr11:51366859-51366860
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11820046	1.00[EUR][1000 genomes]
rs11823157	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823645	1.00[AMR][1000 genomes]
rs11824207	1.00[AMR][1000 genomes]
rs11825549	0.80[AMR][1000 genomes]
rs2201851	0.89[EUR][1000 genomes]
rs2201852	1.00[EUR][1000 genomes]
rs55785523	0.80[AMR][1000 genomes]
rs56022232	1.00[AMR][1000 genomes]
rs56082714	1.00[AMR][1000 genomes]
rs56152058	1.00[EUR][1000 genomes]
rs61890358	1.00[EUR][1000 genomes]
rs61891393	0.95[EUR][1000 genomes]
rs61891428	1.00[EUR][1000 genomes]
rs61891429	1.00[EUR][1000 genomes]
rs61891430	1.00[EUR][1000 genomes]
rs61891431	1.00[EUR][1000 genomes]
rs61891432	1.00[EUR][1000 genomes]
rs61891433	0.97[EUR][1000 genomes]
rs61891434	0.97[EUR][1000 genomes]
rs61891435	1.00[EUR][1000 genomes]
rs61891436	0.95[EUR][1000 genomes]
rs61891437	0.97[EUR][1000 genomes]
rs61891438	0.97[EUR][1000 genomes]
rs61917113	0.83[AFR][1000 genomes]
rs61917116	0.83[AFR][1000 genomes]
rs61917121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61917122	1.00[EUR][1000 genomes]
rs61917123	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61917124	1.00[EUR][1000 genomes]
rs61917125	1.00[EUR][1000 genomes]
rs61917143	1.00[EUR][1000 genomes]
rs61917144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61917145	0.97[EUR][1000 genomes]
rs61917690	1.00[AMR][1000 genomes]
rs61917698	1.00[AMR][1000 genomes]
rs61917699	1.00[AMR][1000 genomes]
rs61917701	1.00[AMR][1000 genomes]
rs61917706	1.00[AMR][1000 genomes]
rs61917707	1.00[AMR][1000 genomes]
rs61917708	1.00[AMR][1000 genomes]
rs61917731	1.00[AMR][1000 genomes]
rs61917732	1.00[AMR][1000 genomes]
rs7106969	1.00[EUR][1000 genomes]
rs7120716	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128581	1.00[EUR][1000 genomes]
rs7294025	1.00[AMR][1000 genomes]
rs7294029	1.00[EUR][1000 genomes]
rs7294186	1.00[EUR][1000 genomes]
rs7294187	1.00[EUR][1000 genomes]
rs8189125	1.00[AMR][1000 genomes]
rs8189129	1.00[AMR][1000 genomes]
rs8189214	0.94[AFR][1000 genomes]
rs8189263	1.00[AMR][1000 genomes]
rs8189378	1.00[AMR][1000 genomes]
rs8189379	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:67 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897533	chr11:50386833-51385894	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1054781	chr11:50417549-51375310	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1036702	chr11:50417549-51377342	Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1047636	chr11:50417549-51410459	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1039300	chr11:50430956-51377342	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1812912	chr11:50440270-51372036	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1037622	chr11:50458746-51377342	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2829950	chr11:50461838-51372036	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1042173	chr11:50472064-51377342	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv897545	chr11:50474459-51385894	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv897549	chr11:50522307-51385894	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv897550	chr11:50522307-51412453	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv897553	chr11:50551954-51385894	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv1809768	chr11:50566719-51426645	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv897559	chr11:50609542-51372036	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv1046048	chr11:50637245-51564415	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
17	esv1836242	chr11:50642550-51446535	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
18	nsv1049789	chr11:50702606-51376963	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv897569	chr11:50730482-51372036	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv897570	chr11:50730482-51385894	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv897571	chr11:50730482-51400197	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	nsv897572	chr11:50730482-51456554	Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
23	nsv897573	chr11:50730482-51538376	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
24	nsv897574	chr11:50730482-51559259	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
25	nsv897575	chr11:50730482-51579085	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
26	nsv897580	chr11:50766308-51379204	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
27	nsv897581	chr11:51093950-51385894	ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
28	nsv1053373	chr11:51095992-51564415	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
29	nsv554427	chr11:51095992-51580203	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
30	nsv897582	chr11:51127089-51579085	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
31	nsv1050270	chr11:51176562-51377342	Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
32	nsv1046059	chr11:51176562-51564415	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
33	nsv1036886	chr11:51183682-51564415	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
34	esv1836283	chr11:51183814-51412453	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
35	esv1806314	chr11:51183814-51429291	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
36	esv1793228	chr11:51183814-51446535	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island	5 gene(s)	inside rSNPs	diseases
37	nsv554434	chr11:51183814-51593877	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
38	nsv554440	chr11:51187354-51578097	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
39	esv2751029	chr11:51192824-51563636	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
40	esv2755032	chr11:51192870-51429291	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
41	nsv1044063	chr11:51192870-51564415	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
42	nsv1051064	chr11:51195051-51500015	ZNF genes & repeats Weak transcription Active TSS Enhancers	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
43	nsv1036334	chr11:51195051-51551394	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
44	nsv897585	chr11:51200820-51379204	ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
45	nsv1045774	chr11:51205141-51564415	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
46	nsv1048401	chr11:51215424-51564415	Active TSS ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
47	nsv1054282	chr11:51228076-51564415	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
48	nsv1040974	chr11:51267021-51564415	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
49	nsv897586	chr11:51314773-51456554	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
50	nsv984470	chr11:51330901-51393222	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:51364000-51368800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:51364400-51367000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr11:51366600-51367600	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr11:51366600-51368400	ZNF genes & repeats	Liver	Liver

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