Variant report

Variant	rs61918088
Chromosome Location	chr12:47922433-47922434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11168152	0.81[AMR][1000 genomes]
rs11168153	0.81[AMR][1000 genomes]
rs11168154	0.81[AMR][1000 genomes]
rs12299011	0.81[AMR][1000 genomes]
rs12302660	0.81[AMR][1000 genomes]
rs12302929	0.81[AMR][1000 genomes]
rs12302930	0.81[AMR][1000 genomes]
rs12304191	0.81[AMR][1000 genomes]
rs12304253	0.81[AMR][1000 genomes]
rs12304441	0.81[AMR][1000 genomes]
rs12311497	0.81[AMR][1000 genomes]
rs12314293	0.81[AMR][1000 genomes]
rs12316410	0.81[AMR][1000 genomes]
rs17801694	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs55948459	0.87[AFR][1000 genomes]
rs56004046	0.87[AFR][1000 genomes]
rs56095677	0.81[AMR][1000 genomes]
rs58366817	1.00[ASN][1000 genomes]
rs61918078	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918089	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61918093	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61918094	1.00[AMR][1000 genomes]
rs61918095	1.00[AMR][1000 genomes]
rs61918096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61918128	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs61918129	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs61918130	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs61918132	0.81[AMR][1000 genomes]
rs61919781	0.87[AFR][1000 genomes]
rs61919782	0.87[AFR][1000 genomes]
rs6580628	0.81[AMR][1000 genomes]
rs7137385	0.81[AMR][1000 genomes]
rs7137539	0.81[AMR][1000 genomes]
rs7296656	0.81[AMR][1000 genomes]
rs7297459	0.81[AMR][1000 genomes]
rs7298372	0.81[AMR][1000 genomes]
rs7306799	0.81[AMR][1000 genomes]
rs7309928	0.81[AMR][1000 genomes]
rs73107470	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73107481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73109412	1.00[AMR][1000 genomes]
rs73109421	0.81[AMR][1000 genomes]
rs73109463	0.81[AMR][1000 genomes]
rs73109474	0.87[AFR][1000 genomes]
rs7313743	0.81[AMR][1000 genomes]
rs757354	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7954402	0.81[AMR][1000 genomes]
rs7958900	0.81[AMR][1000 genomes]
rs7958908	0.81[AMR][1000 genomes]
rs7959019	0.81[AMR][1000 genomes]
rs7965280	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7970593	0.81[AMR][1000 genomes]
rs7970620	0.81[AMR][1000 genomes]
rs7970744	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7970763	0.81[AMR][1000 genomes]
rs7970861	0.81[AMR][1000 genomes]
rs7974013	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558785	chr12:47740440-48044011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv832400	chr12:47840248-48024605	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv430507	chr12:47883933-48079507	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1051131	chr12:47883981-48016556	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47920600-47926400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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