Variant report
Variant | rs73107470 |
---|---|
Chromosome Location | chr12:47907883-47907884 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
(count:2 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-SLC48A1-7 | chr12:47907767-47907926 | NONHSAT027927 |
2 | lnc-SLC48A1-7 | chr12:47907767-47907926 | FPKM1_group_6169_transcript_1 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs58366817 | 1.00[ASN][1000 genomes] |
rs61918078 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61918087 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61918088 | 0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61918089 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61918091 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61918092 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61918093 | 0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61918094 | 0.90[AMR][1000 genomes] |
rs61918095 | 0.90[AMR][1000 genomes] |
rs61918096 | 0.90[AMR][1000 genomes] |
rs61918128 | 0.85[AMR][1000 genomes] |
rs61918129 | 0.85[AMR][1000 genomes] |
rs61918130 | 0.85[AMR][1000 genomes] |
rs73107481 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73109412 | 0.90[AMR][1000 genomes] |
rs7965280 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv558785 | chr12:47740440-48044011 | Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
2 | nsv832400 | chr12:47840248-48024605 | Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv430507 | chr12:47883933-48079507 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv1051131 | chr12:47883981-48016556 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:47904000-47912600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |