Variant report

Variant	rs61918186
Chromosome Location	chr11:101575218-101575219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11603508	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12796679	0.87[EUR][1000 genomes]
rs56829971	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61915443	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61918162	0.84[EUR][1000 genomes]
rs61918184	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7116268	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv461	chr11:101534107-101584004	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv468853	chr11:101539408-101616696	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv556139	chr11:101539408-101616696	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv469987	chr11:101547723-101610380	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv74	chr11:101560540-101608664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv898332	chr11:101562004-101732566	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv1004091	chr11:101564497-101576385	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv3525005	chr11:101565272-101576270	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
13	esv3333748	chr11:101565416-101576117	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
14	esv3369553	chr11:101565456-101575479	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
15	nsv435921	chr11:101565500-101575410	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv3465453	chr11:101565650-101575368	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv2424668	chr11:101565655-101575395	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3525008	chr11:101565692-101575339	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
19	esv3525002	chr11:101565708-101575365	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
20	esv3525006	chr11:101565710-101575293	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
21	esv3465475	chr11:101565714-101575335	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
22	esv3465497	chr11:101565729-101575298	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
23	esv3525003	chr11:101565729-101575308	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
24	esv3465464	chr11:101565730-101575288	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
25	esv3525004	chr11:101565735-101575304	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
26	esv3465486	chr11:101565773-101575264	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
27	esv3525001	chr11:101565784-101575268	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
28	esv3465509	chr11:101565788-101575266	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
29	esv3525009	chr11:101565788-101575266	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
30	nsv832249	chr11:101571819-101749073	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101564800-101578400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:101575200-101575600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr11:101575200-101575800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr11:101575200-101578800	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links