Variant report

Variant	rs61919541
Chromosome Location	chr12:63089129-63089130
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:63083624..63086955-chr12:63088722..63092795,3	MCF-7	breast:
2	chr12:63087268..63091383-chr12:63091807..63093809,4	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs163687	0.91[EUR][1000 genomes]
rs2270483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs342167	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs342168	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs342169	0.91[EUR][1000 genomes]
rs4763026	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4763027	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72648149	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7308249	0.80[EUR][1000 genomes]
rs7952978	0.82[EUR][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63067400-63116800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:63068800-63102800	Weak transcription	Right Ventricle	heart
3	chr12:63069400-63096600	Weak transcription	Fetal Kidney	kidney
4	chr12:63071600-63096400	Weak transcription	Left Ventricle	heart
5	chr12:63072000-63089200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr12:63074200-63092000	Strong transcription	HepG2	liver
7	chr12:63074600-63096400	Weak transcription	Pancreas	Pancrea
8	chr12:63077800-63095400	Weak transcription	Placenta	Placenta
9	chr12:63078000-63118600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr12:63078200-63091600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr12:63079000-63096400	Weak transcription	Ovary	ovary
12	chr12:63079200-63095000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr12:63080000-63096400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr12:63080000-63096400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr12:63080800-63089400	Weak transcription	Thymus	Thymus
16	chr12:63081200-63093800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr12:63082400-63091200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr12:63083600-63091400	Weak transcription	Adipose Nuclei	Adipose
19	chr12:63083800-63094800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr12:63083800-63103000	Weak transcription	Gastric	stomach
21	chr12:63084000-63092000	Weak transcription	Brain Anterior Caudate	brain
22	chr12:63084400-63095000	Weak transcription	Brain Hippocampus Middle	brain
23	chr12:63085200-63095000	Weak transcription	Brain Substantia Nigra	brain
24	chr12:63085400-63095000	Weak transcription	Brain Angular Gyrus	brain
25	chr12:63086000-63092000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr12:63086200-63089800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr12:63086400-63089600	Enhancers	NHLF	lung
28	chr12:63086800-63095200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr12:63087000-63095400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr12:63087200-63090400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr12:63087200-63091800	Weak transcription	HMEC	breast
32	chr12:63087200-63095600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr12:63087200-63113600	Weak transcription	Liver	Liver
34	chr12:63087400-63089200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr12:63087400-63091800	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr12:63087400-63095400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr12:63087400-63097200	Weak transcription	Fetal Intestine Large	intestine
38	chr12:63087600-63091400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr12:63087600-63095000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr12:63087600-63095000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr12:63087600-63096400	Weak transcription	Aorta	Aorta
42	chr12:63087600-63096800	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr12:63087800-63089400	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr12:63087800-63090200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr12:63087800-63090800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr12:63087800-63091200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr12:63087800-63091200	Weak transcription	Right Atrium	heart
48	chr12:63087800-63091200	Weak transcription	NHDF-Ad	bronchial
49	chr12:63087800-63091800	Weak transcription	HSMM	muscle
50	chr12:63087800-63091800	Weak transcription	HSMMtube	muscle

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