Variant report

Variant	rs72648149
Chromosome Location	chr12:63091885-63091886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63087268..63091383-chr12:63091807..63093809,4	MCF-7	breast:
2	chr12:63083624..63086955-chr12:63088722..63092795,3	MCF-7	breast:
3	chr12:62927109..62929930-chr12:63090186..63092753,2	K562	blood:
4	chr12:62995577..62998816-chr12:63091138..63096453,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000199179	Chromatin interaction
ENSG00000257354	Chromatin interaction
ENSG00000221949	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs163687	0.89[EUR][1000 genomes]
rs2270483	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs342167	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs342168	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs342169	0.89[EUR][1000 genomes]
rs4763026	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4763027	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61919541	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7308249	0.80[EUR][1000 genomes]
rs7952978	0.82[EUR][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63067400-63116800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:63068800-63102800	Weak transcription	Right Ventricle	heart
3	chr12:63069400-63096600	Weak transcription	Fetal Kidney	kidney
4	chr12:63071600-63096400	Weak transcription	Left Ventricle	heart
5	chr12:63074200-63092000	Strong transcription	HepG2	liver
6	chr12:63074600-63096400	Weak transcription	Pancreas	Pancrea
7	chr12:63077800-63095400	Weak transcription	Placenta	Placenta
8	chr12:63078000-63118600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr12:63079000-63096400	Weak transcription	Ovary	ovary
10	chr12:63079200-63095000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr12:63080000-63096400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr12:63080000-63096400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr12:63081200-63093800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr12:63083800-63094800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr12:63083800-63103000	Weak transcription	Gastric	stomach
16	chr12:63084000-63092000	Weak transcription	Brain Anterior Caudate	brain
17	chr12:63084400-63095000	Weak transcription	Brain Hippocampus Middle	brain
18	chr12:63085200-63095000	Weak transcription	Brain Substantia Nigra	brain
19	chr12:63085400-63095000	Weak transcription	Brain Angular Gyrus	brain
20	chr12:63086000-63092000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr12:63086800-63095200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr12:63087000-63095400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr12:63087200-63095600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr12:63087200-63113600	Weak transcription	Liver	Liver
25	chr12:63087400-63095400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr12:63087400-63097200	Weak transcription	Fetal Intestine Large	intestine
27	chr12:63087600-63095000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr12:63087600-63095000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr12:63087600-63096400	Weak transcription	Aorta	Aorta
30	chr12:63087600-63096800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr12:63087800-63092000	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr12:63087800-63096400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr12:63087800-63096600	Weak transcription	Fetal Muscle Trunk	muscle
34	chr12:63087800-63096800	Weak transcription	Fetal Intestine Small	intestine
35	chr12:63088200-63096400	Weak transcription	Fetal Stomach	stomach
36	chr12:63088600-63092200	Weak transcription	A549	lung
37	chr12:63088600-63095600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr12:63089400-63095000	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr12:63089800-63093800	Weak transcription	Fetal Thymus	thymus
40	chr12:63089800-63094800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr12:63089800-63095200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr12:63089800-63095400	Weak transcription	Fetal Muscle Leg	muscle
43	chr12:63089800-63096800	Weak transcription	Primary T cells from cord blood	blood
44	chr12:63090400-63095200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr12:63090800-63094400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr12:63090800-63099000	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr12:63091000-63093000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr12:63091000-63099400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr12:63091200-63092200	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr12:63091200-63092200	Enhancers	Right Atrium	heart

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