Variant report

Variant	rs61930643
Chromosome Location	chr12:86174158-86174159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:86166924..86169171-chr12:86172853..86175025,2	K562	blood:
2	chr12:86166852..86169171-chr12:86172826..86175025,3	K562	blood:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1800832	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55644633	0.89[EUR][1000 genomes]
rs55694421	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55736533	0.97[EUR][1000 genomes]
rs55746689	0.89[EUR][1000 genomes]
rs55754162	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55811116	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55811700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55853578	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55856700	0.97[EUR][1000 genomes]
rs55899243	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55900789	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55926212	0.97[EUR][1000 genomes]
rs55966514	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56055322	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56080507	0.87[EUR][1000 genomes]
rs56145432	0.87[EUR][1000 genomes]
rs56169451	0.90[EUR][1000 genomes]
rs56208754	0.90[EUR][1000 genomes]
rs56298026	0.90[EUR][1000 genomes]
rs56323012	0.89[EUR][1000 genomes]
rs61928894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61928895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61928896	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61928898	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61928900	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61928903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61928904	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61928908	1.00[EUR][1000 genomes]
rs61928913	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61928917	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61928918	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61928956	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61928957	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61928958	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61928959	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61930060	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61930061	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61930062	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61930069	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61930070	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61930071	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61930072	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61930073	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61930075	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61930079	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61930080	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61930082	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61930122	0.88[EUR][1000 genomes]
rs61930124	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61930128	0.97[EUR][1000 genomes]
rs61930130	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61930131	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61930135	0.97[EUR][1000 genomes]
rs61930136	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61930576	0.81[EUR][1000 genomes]
rs61930578	0.84[EUR][1000 genomes]
rs61930583	0.83[EUR][1000 genomes]
rs61930594	0.86[EUR][1000 genomes]
rs61930596	0.86[EUR][1000 genomes]
rs61930597	0.87[EUR][1000 genomes]
rs61930598	0.87[EUR][1000 genomes]
rs61930627	0.87[EUR][1000 genomes]
rs61930642	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61930649	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61930651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61930652	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61930653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61930863	0.97[EUR][1000 genomes]
rs61930876	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61930878	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61930880	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61930881	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61930882	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61930895	0.90[EUR][1000 genomes]
rs7132746	0.86[EUR][1000 genomes]
rs7962310	0.97[EUR][1000 genomes]
rs7973110	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054573	chr12:85658602-86235433	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1035600	chr12:85661373-86235433	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1052187	chr12:85954455-86278200	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv541560	chr12:85954455-86278200	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1054475	chr12:85985510-86175711	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv541561	chr12:85985510-86175711	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv974006	chr12:86173654-86176914	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86170200-86179200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:86171800-86177000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr12:86172400-86174600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr12:86172600-86174200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr12:86172600-86174600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr12:86173000-86174600	Weak transcription	Fetal Lung	lung
7	chr12:86173000-86176400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr12:86173600-86177800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:86173800-86176600	Weak transcription	A549	lung
10	chr12:86174000-86177800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr12:86174000-86178000	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links