Variant report

Variant	rs61930709
Chromosome Location	chr12:44282098-44282099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1531402	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55669442	0.87[EUR][1000 genomes]
rs55821943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55913788	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55914098	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55987826	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55995646	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56008731	0.88[EUR][1000 genomes]
rs56024677	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56066688	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56134007	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56168228	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56312131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57066844	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57331385	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58531015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58824683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58938395	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60120002	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60221557	0.93[EUR][1000 genomes]
rs60306990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60467323	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60715781	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61930678	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61930689	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61930691	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61930693	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61930716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61930718	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61932974	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61933009	0.88[EUR][1000 genomes]
rs71435964	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73085709	0.88[EUR][1000 genomes]
rs73085734	0.88[EUR][1000 genomes]
rs7971036	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899048	chr12:44209423-44307888	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44240400-44293000	Weak transcription	Aorta	Aorta
2	chr12:44256400-44285600	Weak transcription	HSMMtube	muscle
3	chr12:44274600-44286000	Weak transcription	Pancreas	Pancrea
4	chr12:44278600-44285800	Weak transcription	Osteobl	bone
5	chr12:44278600-44287400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr12:44279200-44286200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr12:44279200-44292600	Weak transcription	Left Ventricle	heart
8	chr12:44279200-44297600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr12:44279600-44283200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr12:44279600-44285400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr12:44280200-44286000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr12:44281800-44287600	Weak transcription	Psoas Muscle	Psoas

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