Variant report

Variant	rs61932974
Chromosome Location	chr12:44315409-44315410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:44311484..44313107-chr12:44314992..44317607,2	K562	blood:
2	chr12:44158810..44161321-chr12:44313514..44316274,2	K562	blood:
3	chr12:44310016..44313786-chr12:44314229..44318943,4	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1531402	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55669442	0.80[EUR][1000 genomes]
rs55821943	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55913788	0.86[EUR][1000 genomes]
rs55914098	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55987826	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55995646	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56008731	0.82[EUR][1000 genomes]
rs56024677	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56066688	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56134007	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56168228	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56312131	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57066844	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57331385	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58531015	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58824683	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58938395	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60120002	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60221557	1.00[EUR][1000 genomes]
rs60306990	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60467323	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60715781	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61930678	0.88[AFR][1000 genomes]
rs61930689	0.80[EUR][1000 genomes]
rs61930691	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61930693	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61930709	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61930716	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61930718	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61933009	0.95[EUR][1000 genomes]
rs71435964	0.82[EUR][1000 genomes]
rs73085709	0.95[EUR][1000 genomes]
rs73085734	0.95[EUR][1000 genomes]
rs7971036	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526719	chr12:44298417-44315762	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44307000-44315600	Weak transcription	NHDF-Ad	bronchial
2	chr12:44307400-44324000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:44308400-44318400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:44311400-44324600	Weak transcription	Left Ventricle	heart
5	chr12:44314800-44317000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr12:44314800-44317000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr12:44314800-44317200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr12:44315200-44324200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr12:44315400-44315800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr12:44315400-44316200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr12:44315400-44316800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr12:44315400-44316800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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