Variant report

Variant	rs61933176
Chromosome Location	chr12:44202036-44202037
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
TWF1	TF binding region
ENSG00000198001	Chromatin interaction
ENSG00000129317	Chromatin interaction
ENSG00000204569	Chromatin interaction
ENSG00000222894	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11182288	0.81[AMR][1000 genomes]
rs13377809	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55759317	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56322120	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61567111	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61930676	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61933174	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61933177	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933179	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61933180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933142	chr12:44130156-44278300	Active TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44201000-44202200	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr12:44201000-44202200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr12:44201000-44205800	Weak transcription	HMEC	breast
4	chr12:44201000-44207400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr12:44201200-44206200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:44201400-44202200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr12:44201400-44204000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr12:44201400-44209400	Weak transcription	Fetal Intestine Small	intestine
9	chr12:44201600-44203800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr12:44201600-44204400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr12:44201600-44204800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr12:44201600-44205200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr12:44201800-44202200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr12:44201800-44205400	Weak transcription	NHEK	skin
15	chr12:44202000-44202200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
16	chr12:44202000-44202600	Enhancers	Esophagus	oesophagus
17	chr12:44202000-44217800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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