Variant report

Variant	rs61940119
Chromosome Location	chr12:106256013-106256014
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106254674..106256372-chr12:106314375..106316199,2	MCF-7	breast:
2	chr12:106167922..106169528-chr12:106254907..106257497,2	MCF-7	breast:
3	chr12:106252576..106257330-chr12:106324880..106330173,10	MCF-7	breast:
4	chr12:106254601..106257221-chr12:106327502..106331363,4	MCF-7	breast:
5	chr12:106252439..106256460-chr12:106528954..106534113,10	MCF-7	breast:
6	chr12:106248554..106253147-chr12:106253796..106257710,5	MCF-7	breast:
7	chr12:106253022..106256354-chr12:106530460..106534147,5	MCF-7	breast:
8	chr12:106253691..106256253-chr12:106286526..106288300,2	MCF-7	breast:
9	chr12:106233406..106235430-chr12:106254308..106256994,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61940120	0.92[AMR][1000 genomes]
rs61940122	0.92[AMR][1000 genomes]
rs73190154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106249400-106256800	Weak transcription	HSMMtube	muscle
2	chr12:106255200-106259600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:106255400-106256200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:106255800-106257000	Enhancers	HUVEC	blood vessel
5	chr12:106256000-106256200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:106256000-106256200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr12:106256000-106256200	Enhancers	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links