Variant report

Variant	rs61940122
Chromosome Location	chr12:106261450-106261451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2730485	1.00[ASN][1000 genomes]
rs61940119	0.92[AMR][1000 genomes]
rs61940120	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61940125	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61940127	1.00[ASN][1000 genomes]
rs61940142	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61940145	0.85[AMR][1000 genomes]
rs73190154	0.92[AMR][1000 genomes]
rs73190191	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73192116	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106260000-106263400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:106261400-106273000	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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