Variant report

Variant	rs73190191
Chromosome Location	chr12:106292888-106292889
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2730485	1.00[ASN][1000 genomes]
rs61940120	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61940122	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61940125	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61940127	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61940142	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61940145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73192116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106286400-106294400	Weak transcription	HSMMtube	muscle
2	chr12:106290000-106293800	Enhancers	NHEK	skin
3	chr12:106292000-106293000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr12:106292000-106293200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr12:106292200-106293200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr12:106292200-106293600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr12:106292400-106294400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:106292600-106293400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr12:106292800-106293600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:106292800-106305600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links