Variant report

Variant	rs61946436
Chromosome Location	chr13:29605554-29605555
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11618690	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11618708	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17571928	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17650122	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs186586	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2475538	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2479757	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2479758	0.81[ASN][1000 genomes]
rs2987336	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3011022	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs326507	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs326508	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4377014	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4769659	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56023620	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59155661	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs621417	0.81[ASN][1000 genomes]
rs7329021	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7986484	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7992303	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7994188	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7999249	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7999783	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8000492	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8001303	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9783544	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29585000-29609600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:29601000-29605800	Weak transcription	Aorta	Aorta
3	chr13:29602600-29607800	Enhancers	Fetal Heart	heart

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