Variant report

Variant	rs61956190
Chromosome Location	chr13:54705491-54705492
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1334874	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1335976	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1335977	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1335979	0.97[EUR][1000 genomes]
rs1335980	0.95[EUR][1000 genomes]
rs1577576	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1763779	0.90[EUR][1000 genomes]
rs1932503	0.97[EUR][1000 genomes]
rs2005372	0.97[EUR][1000 genomes]
rs2050534	0.95[EUR][1000 genomes]
rs2050535	0.97[EUR][1000 genomes]
rs2050536	0.97[EUR][1000 genomes]
rs2152503	0.97[EUR][1000 genomes]
rs2184678	0.97[EUR][1000 genomes]
rs2210849	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2408992	0.95[EUR][1000 genomes]
rs2408993	0.97[EUR][1000 genomes]
rs2408994	0.97[EUR][1000 genomes]
rs2408995	0.97[EUR][1000 genomes]
rs2576116	0.86[AMR][1000 genomes]
rs4274311	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4883848	0.97[EUR][1000 genomes]
rs4883850	0.97[EUR][1000 genomes]
rs4884867	0.97[EUR][1000 genomes]
rs5002542	0.97[EUR][1000 genomes]
rs5002543	0.97[EUR][1000 genomes]
rs510147	0.90[EUR][1000 genomes]
rs551408	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs564930	0.93[EUR][1000 genomes]
rs574623	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs600930	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs653228	0.98[EUR][1000 genomes]
rs6561768	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs657383	0.90[EUR][1000 genomes]
rs667408	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs681704	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs706588	0.90[ASN][1000 genomes]
rs7326186	0.91[EUR][1000 genomes]
rs7326388	0.97[EUR][1000 genomes]
rs7329766	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7335075	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7335475	0.97[EUR][1000 genomes]
rs7984593	0.97[EUR][1000 genomes]
rs7985320	0.97[EUR][1000 genomes]
rs7985834	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7986212	0.97[EUR][1000 genomes]
rs7991755	0.97[EUR][1000 genomes]
rs7992992	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8001182	0.97[EUR][1000 genomes]
rs878943	0.97[EUR][1000 genomes]
rs9527179	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9536639	0.97[EUR][1000 genomes]
rs9568990	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9596914	0.81[EUR][1000 genomes]
rs988526	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375545	chr13:54517432-54908108	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1049	chr13:54684354-54728981	Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2757533	chr13:54692032-54711236	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv2759938	chr13:54692032-54711236	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54689000-54706000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:54691800-54706000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr13:54702800-54706600	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
4	chr13:54703600-54707200	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr13:54704200-54707400	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr13:54704400-54707000	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr13:54704400-54707000	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr13:54704600-54707000	Active TSS	H1 Cell Line	embryonic stem cell
9	chr13:54704600-54707400	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr13:54704800-54706200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr13:54704800-54707000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr13:54705000-54705600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr13:54705200-54707000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr13:54705400-54707000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr13:54705400-54707400	Active TSS	H9 Cell Line	embryonic stem cell

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