Variant report

Variant	rs61963201
Chromosome Location	chr13:111048137-111048138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57407211	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57442307	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57465067	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58303641	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58556553	0.84[ASN][1000 genomes]
rs61445463	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61659590	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61963199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61963202	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9583490	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2751128	chr13:111040798-111132490	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3448379	chr13:111045451-111048449	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111040800-111049600	Enhancers	NHDF-Ad	bronchial
2	chr13:111040800-111050800	Weak transcription	Psoas Muscle	Psoas
3	chr13:111040800-111058000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr13:111041400-111048600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr13:111041400-111048600	Weak transcription	Esophagus	oesophagus
6	chr13:111041400-111058000	Weak transcription	Fetal Intestine Large	intestine
7	chr13:111041800-111048600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr13:111042200-111048800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr13:111043000-111048800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr13:111043000-111049600	Weak transcription	Right Ventricle	heart
11	chr13:111043000-111057000	Weak transcription	NHEK	skin
12	chr13:111043000-111059200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr13:111043000-111060000	Weak transcription	A549	lung
14	chr13:111044000-111048400	Weak transcription	HMEC	breast
15	chr13:111044000-111051000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr13:111044200-111049400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr13:111044400-111048800	Weak transcription	Fetal Intestine Small	intestine
18	chr13:111044800-111049600	Enhancers	Adipose Nuclei	Adipose
19	chr13:111045000-111049600	Enhancers	NHLF	lung
20	chr13:111045200-111048400	Weak transcription	Fetal Heart	heart
21	chr13:111045200-111056800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr13:111045400-111048200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr13:111045400-111048600	Enhancers	Osteobl	bone
24	chr13:111045400-111048800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr13:111045600-111048600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr13:111045600-111050000	Weak transcription	Fetal Kidney	kidney
27	chr13:111045600-111054200	Weak transcription	Spleen	Spleen
28	chr13:111045600-111054600	Weak transcription	HUVEC	blood vessel
29	chr13:111045600-111058200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr13:111045600-111059400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr13:111046600-111048200	Genic enhancers	Fetal Muscle Leg	muscle
32	chr13:111046600-111048800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr13:111046600-111049000	Enhancers	Ovary	ovary
34	chr13:111046800-111048200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr13:111046800-111048200	Genic enhancers	Fetal Stomach	stomach
36	chr13:111046800-111049000	Enhancers	Placenta	Placenta
37	chr13:111046800-111049600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr13:111046800-111049600	Enhancers	Colon Smooth Muscle	Colon
39	chr13:111046800-111049600	Enhancers	Rectal Smooth Muscle	rectum
40	chr13:111046800-111049600	Enhancers	HSMMtube	muscle
41	chr13:111046800-111050200	Enhancers	Lung	lung
42	chr13:111046800-111051600	Enhancers	Left Ventricle	heart
43	chr13:111047000-111048200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
44	chr13:111047000-111048600	Enhancers	Muscle Satellite Cultured Cells	--
45	chr13:111047000-111048600	Enhancers	HSMM	muscle
46	chr13:111047200-111048200	Genic enhancers	NH-A	brain
47	chr13:111047200-111048400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr13:111047200-111048800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr13:111047200-111049000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr13:111047200-111050000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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