Variant report

Variant	rs61966753
Chromosome Location	chr13:96744456-96744457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96704503..96706630-chr13:96744009..96746380,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102595	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61966750	1.00[AMR][1000 genomes]
rs61972925	0.90[AMR][1000 genomes]
rs61972949	0.83[AMR][1000 genomes]
rs61973961	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1051574	chr13:96550653-96779248	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1040320	chr13:96573646-96790859	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
8	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	esv3512096	chr13:96741726-96744649	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3512098	chr13:96741726-96744649	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3404879	chr13:96741976-96744524	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96741800-96744600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr13:96741800-96744600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr13:96741800-96746000	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr13:96742400-96744600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
5	chr13:96742400-96744600	Bivalent/Poised TSS	NHEK	skin
6	chr13:96743200-96744600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
7	chr13:96743400-96745200	Bivalent/Poised TSS	Fetal Brain Female	brain
8	chr13:96743600-96744600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
9	chr13:96743600-96744800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
10	chr13:96743800-96744600	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
11	chr13:96744000-96744600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
12	chr13:96744200-96744600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
13	chr13:96744200-96744600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
14	chr13:96744200-96744800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
15	chr13:96744200-96744800	Bivalent Enhancer	HUVEC	blood vessel
16	chr13:96744400-96744600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
17	chr13:96744400-96744600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
18	chr13:96744400-96744600	Bivalent Enhancer	Brain Substantia Nigra	brain
19	chr13:96744400-96744600	Bivalent/Poised TSS	Fetal Brain Male	brain
20	chr13:96744400-96744600	Bivalent/Poised TSS	Fetal Stomach	stomach
21	chr13:96744400-96744600	Enhancers	Pancreas	Pancrea
22	chr13:96744400-96744600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
23	chr13:96744400-96745000	Active TSS	Brain Anterior Caudate	brain
24	chr13:96744400-96745400	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr13:96744400-96745400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr13:96744400-96752800	Weak transcription	Aorta	Aorta

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