Variant report

Variant	rs61971525
Chromosome Location	chr14:21845686-21845687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:21839767..21842102-chr14:21844201..21846958,2	K562	blood:
2	chr14:21735983..21738271-chr14:21843231..21846162,2	MCF-7	breast:
3	chr14:21843180..21848337-chr14:21848754..21853726,9	MCF-7	breast:
4	chr14:21820070..21822211-chr14:21844617..21847241,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260830	Chromatin interaction
ENSG00000092201	Chromatin interaction
ENSG00000092199	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs17104027	0.88[EUR][1000 genomes]
rs17105120	0.94[EUR][1000 genomes]
rs45540636	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs45618735	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs56085953	0.94[EUR][1000 genomes]
rs57254369	0.83[EUR][1000 genomes]
rs57764234	0.81[EUR][1000 genomes]
rs57968228	0.94[EUR][1000 genomes]
rs58673747	0.87[EUR][1000 genomes]
rs58981052	0.81[EUR][1000 genomes]
rs60262326	0.81[EUR][1000 genomes]
rs61739513	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs61752837	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61971517	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs61971518	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs61971519	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs61971520	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs61971521	0.88[EUR][1000 genomes]
rs61971523	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61971524	0.94[EUR][1000 genomes]
rs61973163	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs61973164	0.94[EUR][1000 genomes]
rs61973165	0.94[EUR][1000 genomes]
rs61973169	0.94[EUR][1000 genomes]
rs61973170	0.94[EUR][1000 genomes]
rs61973172	1.00[EUR][1000 genomes]
rs61973173	0.94[EUR][1000 genomes]
rs61973174	0.94[EUR][1000 genomes]
rs61973175	0.94[EUR][1000 genomes]
rs61973178	0.94[EUR][1000 genomes]
rs61973179	0.94[EUR][1000 genomes]
rs61973181	0.94[EUR][1000 genomes]
rs61973182	0.94[EUR][1000 genomes]
rs61973183	0.94[EUR][1000 genomes]
rs61973186	0.81[EUR][1000 genomes]
rs61973188	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs61973189	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs61973190	0.81[EUR][1000 genomes]
rs61973191	0.87[EUR][1000 genomes]
rs61973192	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs61973193	0.87[EUR][1000 genomes]
rs61973212	0.83[AMR][1000 genomes]
rs61977518	0.94[EUR][1000 genomes]
rs61977520	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs61977522	0.88[EUR][1000 genomes]
rs61977523	0.88[EUR][1000 genomes]
rs61977524	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7141803	0.94[EUR][1000 genomes]
rs7160222	0.81[EUR][1000 genomes]
rs8006302	0.81[EUR][1000 genomes]
rs8016474	0.94[EUR][1000 genomes]
rs8021793	0.88[EUR][1000 genomes]
rs8022558	0.94[EUR][1000 genomes]
rs8023081	0.94[EUR][1000 genomes]
rs9944063	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530009	chr14:21377022-22044608	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
2	nsv530769	chr14:21407536-22139126	Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	nsv916319	chr14:21507092-21896590	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1036762	chr14:21507093-22101805	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	nsv541976	chr14:21507093-22101805	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
6	nsv530770	chr14:21526410-21852363	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
7	nsv1043570	chr14:21575068-21899964	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv541977	chr14:21575068-21899964	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	nsv1048032	chr14:21602341-21847247	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
10	nsv541978	chr14:21602341-21847247	Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
11	nsv948957	chr14:21616875-21928338	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
12	nsv1044822	chr14:21659344-21860081	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv1051407	chr14:21692670-21907366	Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
14	nsv541984	chr14:21692670-21907366	Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
15	nsv530010	chr14:21692670-21923767	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
16	nsv428617	chr14:21721165-21871164	Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
17	esv3518898	chr14:21805983-22077584	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
18	esv3518899	chr14:21805983-22077584	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21818000-21848800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:21818000-21849200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:21818800-21846800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
4	chr14:21818800-21848200	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr14:21819000-21846200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr14:21819000-21846600	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr14:21819000-21847200	Strong transcription	HepG2	liver
8	chr14:21819000-21847600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr14:21819000-21848000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:21819600-21847600	Strong transcription	Hela-S3	cervix
11	chr14:21821400-21846800	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr14:21824400-21851000	Weak transcription	Stomach Mucosa	stomach
13	chr14:21836600-21851200	Weak transcription	Pancreas	Pancrea
14	chr14:21836600-21851400	Weak transcription	Gastric	stomach
15	chr14:21836600-21851400	Weak transcription	Spleen	Spleen
16	chr14:21836800-21851200	Weak transcription	Aorta	Aorta
17	chr14:21837200-21851200	Weak transcription	Small Intestine	intestine
18	chr14:21838000-21851200	Weak transcription	Lung	lung
19	chr14:21838200-21850200	Weak transcription	Fetal Heart	heart
20	chr14:21838400-21847400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr14:21838400-21848600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr14:21838400-21848800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr14:21838400-21849800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr14:21838400-21850200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr14:21838600-21848600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr14:21838600-21849000	Weak transcription	Fetal Brain Male	brain
27	chr14:21838600-21850000	Weak transcription	Brain Substantia Nigra	brain
28	chr14:21839200-21851000	Weak transcription	Right Ventricle	heart
29	chr14:21839600-21845800	Weak transcription	Fetal Intestine Small	intestine
30	chr14:21839600-21845800	Weak transcription	Fetal Stomach	stomach
31	chr14:21839600-21847400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr14:21839600-21851000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr14:21839600-21851000	Weak transcription	Thymus	Thymus
34	chr14:21839600-21851200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr14:21839600-21851200	Weak transcription	Esophagus	oesophagus
36	chr14:21839800-21849800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr14:21840200-21848200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr14:21840200-21851000	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr14:21840200-21851000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr14:21840400-21850200	Weak transcription	Brain Germinal Matrix	brain
41	chr14:21840400-21850600	Weak transcription	Fetal Kidney	kidney
42	chr14:21840600-21851200	Weak transcription	Colonic Mucosa	Colon
43	chr14:21840600-21851200	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr14:21840800-21848000	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr14:21840800-21848800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr14:21840800-21849800	Weak transcription	Fetal Lung	lung
47	chr14:21840800-21850200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr14:21840800-21850200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr14:21840800-21850200	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr14:21840800-21851400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links