Variant report

Variant	rs61973173
Chromosome Location	chr14:21879157-21879158
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:21874917..21880880-chr14:21901855..21906138,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100888	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs17104027	0.94[EUR][1000 genomes]
rs17105120	1.00[EUR][1000 genomes]
rs45540636	0.88[EUR][1000 genomes]
rs45618735	0.88[EUR][1000 genomes]
rs56085953	1.00[EUR][1000 genomes]
rs57254369	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57764234	0.88[EUR][1000 genomes]
rs57968228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58673747	0.81[EUR][1000 genomes]
rs58981052	0.88[EUR][1000 genomes]
rs60262326	0.88[EUR][1000 genomes]
rs61739513	0.88[EUR][1000 genomes]
rs61752837	0.94[EUR][1000 genomes]
rs61971517	0.88[EUR][1000 genomes]
rs61971518	0.88[EUR][1000 genomes]
rs61971519	0.82[EUR][1000 genomes]
rs61971520	0.88[EUR][1000 genomes]
rs61971521	0.94[EUR][1000 genomes]
rs61971523	0.94[EUR][1000 genomes]
rs61971524	1.00[EUR][1000 genomes]
rs61971525	0.94[EUR][1000 genomes]
rs61973163	1.00[EUR][1000 genomes]
rs61973164	1.00[EUR][1000 genomes]
rs61973165	1.00[EUR][1000 genomes]
rs61973169	1.00[EUR][1000 genomes]
rs61973170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61973172	0.94[EUR][1000 genomes]
rs61973174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61973175	1.00[EUR][1000 genomes]
rs61973178	1.00[EUR][1000 genomes]
rs61973179	1.00[EUR][1000 genomes]
rs61973181	1.00[EUR][1000 genomes]
rs61973182	1.00[EUR][1000 genomes]
rs61973183	1.00[EUR][1000 genomes]
rs61973186	0.88[EUR][1000 genomes]
rs61973188	0.81[EUR][1000 genomes]
rs61973189	0.81[EUR][1000 genomes]
rs61973191	0.81[EUR][1000 genomes]
rs61973192	0.81[EUR][1000 genomes]
rs61973193	0.81[EUR][1000 genomes]
rs61977518	0.88[EUR][1000 genomes]
rs61977520	0.88[EUR][1000 genomes]
rs61977522	0.94[EUR][1000 genomes]
rs61977523	0.94[EUR][1000 genomes]
rs61977524	0.88[EUR][1000 genomes]
rs7141803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7160222	0.88[EUR][1000 genomes]
rs8006302	0.88[EUR][1000 genomes]
rs8016474	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8021793	0.94[EUR][1000 genomes]
rs8022558	1.00[EUR][1000 genomes]
rs8023081	1.00[EUR][1000 genomes]
rs9944063	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530009	chr14:21377022-22044608	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
2	nsv530769	chr14:21407536-22139126	Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	nsv916319	chr14:21507092-21896590	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1036762	chr14:21507093-22101805	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	nsv541976	chr14:21507093-22101805	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
6	nsv1043570	chr14:21575068-21899964	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv541977	chr14:21575068-21899964	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv948957	chr14:21616875-21928338	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
9	nsv1051407	chr14:21692670-21907366	Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
10	nsv541984	chr14:21692670-21907366	Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
11	nsv530010	chr14:21692670-21923767	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
12	esv3518898	chr14:21805983-22077584	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
13	esv3518899	chr14:21805983-22077584	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
14	nsv1054013	chr14:21868964-21992109	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
15	nsv541991	chr14:21868964-21992109	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
16	nsv530011	chr14:21876973-21985341	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21853200-21884400	Strong transcription	NH-A	brain
2	chr14:21853200-21904000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:21853400-21879800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:21853400-21884200	Strong transcription	Colon Smooth Muscle	Colon
5	chr14:21853400-21884400	Strong transcription	Fetal Muscle Leg	muscle
6	chr14:21853400-21884800	Strong transcription	Fetal Brain Female	brain
7	chr14:21853400-21900000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:21853400-21900000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:21853400-21900000	Strong transcription	Adipose Nuclei	Adipose
10	chr14:21853400-21900000	Strong transcription	Placenta	Placenta
11	chr14:21853400-21900200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr14:21853400-21901800	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr14:21853600-21884000	Strong transcription	Brain Substantia Nigra	brain
14	chr14:21853600-21884400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr14:21853600-21884400	Strong transcription	HSMM	muscle
16	chr14:21853600-21885000	Strong transcription	Stomach Smooth Muscle	stomach
17	chr14:21853600-21885800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:21853600-21886800	Strong transcription	Duodenum Smooth Muscle	Duodenum
19	chr14:21853600-21888800	Strong transcription	Fetal Intestine Large	intestine
20	chr14:21853600-21897200	Strong transcription	Fetal Muscle Trunk	muscle
21	chr14:21853600-21900000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:21853600-21900200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr14:21853600-21900200	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr14:21853600-21901400	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr14:21853600-21902000	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr14:21853600-21903400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr14:21853800-21884400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
28	chr14:21853800-21900000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr14:21853800-21900000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr14:21853800-21900200	Strong transcription	Fetal Thymus	thymus
31	chr14:21853800-21901400	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr14:21854000-21885800	Strong transcription	HepG2	liver
33	chr14:21854000-21900200	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr14:21854000-21904000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:21854200-21884400	Strong transcription	H9 Cell Line	embryonic stem cell
36	chr14:21854200-21885400	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr14:21854400-21886400	Strong transcription	Dnd41	blood
38	chr14:21854400-21900000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr14:21854400-21900200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr14:21855200-21900200	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr14:21855600-21884400	Strong transcription	Brain Inferior Temporal Lobe	brain
42	chr14:21855600-21897000	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr14:21855600-21899200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr14:21855800-21884800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr14:21855800-21900200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr14:21855800-21900200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr14:21856000-21882000	Strong transcription	GM12878-XiMat	blood
48	chr14:21856000-21884800	Strong transcription	NHEK	skin
49	chr14:21856000-21885000	Strong transcription	Duodenum Mucosa	Duodenum
50	chr14:21856000-21885600	Strong transcription	Rectal Mucosa Donor 31	rectum

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