Variant report

Variant	rs61973324
Chromosome Location	chr13:48711560-48711561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11616639	0.89[AMR][1000 genomes]
rs1410117	0.98[AMR][1000 genomes]
rs4294712	0.92[AMR][1000 genomes]
rs4369555	0.80[AMR][1000 genomes]
rs55633570	0.87[AMR][1000 genomes]
rs56399021	0.92[AMR][1000 genomes]
rs9526442	0.90[AMR][1000 genomes]
rs9526443	0.92[AMR][1000 genomes]
rs9526447	0.98[AMR][1000 genomes]
rs9534888	0.81[AMR][1000 genomes]
rs9534895	0.83[AMR][1000 genomes]
rs9534900	0.87[AMR][1000 genomes]
rs9534931	0.93[AMR][1000 genomes]
rs9534933	0.92[AMR][1000 genomes]
rs9534937	0.92[AMR][1000 genomes]
rs9534939	0.92[AMR][1000 genomes]
rs9534946	0.92[AMR][1000 genomes]
rs9534947	0.92[AMR][1000 genomes]
rs9534948	0.92[AMR][1000 genomes]
rs9534951	0.90[AMR][1000 genomes]
rs9534952	0.82[AMR][1000 genomes]
rs9534961	0.97[AMR][1000 genomes]
rs9534965	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832601	chr13:48569952-48735939	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv541766	chr13:48703229-48857639	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1047140	chr13:48703732-48765860	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv541767	chr13:48703732-48765860	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48701800-48725800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:48702200-48713800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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