Variant report

Variant	rs61979848
Chromosome Location	chr14:97205580-97205581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1041010	1.00[ASN][1000 genomes]
rs11621451	1.00[ASN][1000 genomes]
rs11622413	1.00[ASN][1000 genomes]
rs17214428	1.00[ASN][1000 genomes]
rs2181692	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35120856	1.00[ASN][1000 genomes]
rs35650630	1.00[ASN][1000 genomes]
rs35878456	1.00[ASN][1000 genomes]
rs4905511	1.00[ASN][1000 genomes]
rs55708042	1.00[ASN][1000 genomes]
rs56113722	1.00[ASN][1000 genomes]
rs57236232	1.00[ASN][1000 genomes]
rs57786368	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58570755	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59328104	1.00[ASN][1000 genomes]
rs61979852	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979853	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72708800	1.00[ASN][1000 genomes]
rs8011580	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048302	chr14:97000845-97250538	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1041078	chr14:97001679-97279220	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1050075	chr14:97004951-97279220	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97199200-97206000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:97202000-97207400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:97203000-97205800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr14:97203200-97207400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr14:97203400-97207600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:97203800-97205600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr14:97204000-97207000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr14:97204400-97206200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:97204600-97205600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:97204600-97206200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr14:97204600-97206600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr14:97204600-97207400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:97205000-97205600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr14:97205200-97206400	Flanking Active TSS	Brain Germinal Matrix	brain
15	chr14:97205200-97206400	Flanking Active TSS	Fetal Brain Female	brain
16	chr14:97205400-97205600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
17	chr14:97205400-97205600	Bivalent Enhancer	Fetal Kidney	kidney
18	chr14:97205400-97205800	Bivalent Enhancer	Fetal Brain Male	brain
19	chr14:97205400-97206000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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