Variant report

Variant	rs61980356
Chromosome Location	chr14:69841943-69841944
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69841356..69843635-chr14:69843836..69846318,2	K562	blood:
2	chr14:69821172..69826934-chr14:69835934..69842143,9	MCF-7	breast:
3	chr14:69834457..69836260-chr14:69841920..69844753,2	K562	blood:
4	chr14:69833439..69838748-chr14:69841652..69843857,5	K562	blood:
5	chr14:69841672..69843783-chr14:69865247..69866834,2	MCF-7	breast:
6	chr14:69841304..69844140-chr14:69845246..69848193,3	K562	blood:

Variant related genes	Relation type
ENSG00000029364	Chromatin interaction
ENSG00000100632	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1045301	0.98[ASN][1000 genomes]
rs11537776	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12050199	0.94[ASN][1000 genomes]
rs12050204	0.94[ASN][1000 genomes]
rs12588551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12589107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12589533	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1455054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17107026	0.84[ASN][1000 genomes]
rs61982365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982390	0.98[ASN][1000 genomes]
rs61982402	0.96[ASN][1000 genomes]
rs61982404	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982406	0.98[ASN][1000 genomes]
rs61982426	0.98[ASN][1000 genomes]
rs72625683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72625684	0.84[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69818600-69842800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:69821800-69852400	Weak transcription	Spleen	Spleen
3	chr14:69824200-69864000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:69828000-69843000	Weak transcription	GM12878-XiMat	blood
5	chr14:69830000-69847200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:69830200-69842400	Weak transcription	NHDF-Ad	bronchial
7	chr14:69830200-69843000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:69831200-69842200	Weak transcription	Brain Hippocampus Middle	brain
9	chr14:69831200-69842800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr14:69831200-69852400	Weak transcription	Brain Substantia Nigra	brain
11	chr14:69831400-69843200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr14:69831600-69843000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:69832000-69842400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr14:69832400-69842400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:69833200-69845600	Weak transcription	Fetal Stomach	stomach
16	chr14:69833400-69842200	Weak transcription	Fetal Intestine Large	intestine
17	chr14:69834200-69842800	Weak transcription	Lung	lung
18	chr14:69835400-69851800	Weak transcription	Psoas Muscle	Psoas
19	chr14:69835600-69851600	Weak transcription	Pancreas	Pancrea
20	chr14:69835800-69843400	Weak transcription	Brain Angular Gyrus	brain
21	chr14:69835800-69852400	Weak transcription	Small Intestine	intestine
22	chr14:69836400-69842200	Weak transcription	Thymus	Thymus
23	chr14:69836800-69843200	Weak transcription	Right Ventricle	heart
24	chr14:69836800-69851600	Weak transcription	Gastric	stomach
25	chr14:69837000-69842000	Weak transcription	Osteobl	bone
26	chr14:69837000-69845800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr14:69837200-69842200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr14:69837200-69842200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr14:69837200-69842200	Weak transcription	HSMMtube	muscle
30	chr14:69837200-69842400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr14:69837200-69842600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr14:69837200-69842800	Weak transcription	Fetal Thymus	thymus
33	chr14:69837200-69843200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr14:69837200-69860000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr14:69837400-69842400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr14:69837400-69842800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr14:69837400-69842800	Weak transcription	Ovary	ovary
38	chr14:69837400-69851000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr14:69837600-69842200	Weak transcription	NHEK	skin
40	chr14:69837600-69843200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr14:69838000-69842400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr14:69838000-69846200	Weak transcription	Esophagus	oesophagus
43	chr14:69838200-69842000	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr14:69839000-69843000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr14:69839200-69842000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr14:69839200-69852200	Weak transcription	Aorta	Aorta
47	chr14:69839600-69842400	Weak transcription	HepG2	liver
48	chr14:69839800-69842600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr14:69839800-69842800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr14:69839800-69851600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links