Variant report

Variant	rs17107026
Chromosome Location	chr14:69961833-69961834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1045301	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs11537776	0.84[ASN][1000 genomes]
rs12050199	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs12050204	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs12588551	0.84[ASN][1000 genomes]
rs12589107	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs12589533	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs12893687	0.86[CHB][hapmap]
rs17107033	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17107046	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17107058	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs17107065	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61980356	0.84[ASN][1000 genomes]
rs61982365	0.84[ASN][1000 genomes]
rs61982389	0.84[ASN][1000 genomes]
rs61982390	0.82[ASN][1000 genomes]
rs61982402	0.80[ASN][1000 genomes]
rs61982404	0.84[ASN][1000 genomes]
rs61982406	0.82[ASN][1000 genomes]
rs61982426	0.82[ASN][1000 genomes]
rs61982431	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61982432	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72625683	0.84[ASN][1000 genomes]
rs72625684	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3396933	chr14:69906914-70001258	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1048882	chr14:69920881-69976694	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1052107	chr14:69922552-69969297	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1039230	chr14:69922552-69972002	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1039192	chr14:69922552-69976694	Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv456335	chr14:69928307-69971598	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv564967	chr14:69928307-69971598	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv1050258	chr14:69942127-69976694	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69960800-69963400	Enhancers	Fetal Muscle Leg	muscle
2	chr14:69960800-69967400	Weak transcription	Right Ventricle	heart
3	chr14:69961600-69962000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr14:69961800-69962000	Flanking Active TSS	HSMMtube	muscle
5	chr14:69961800-69963000	Enhancers	Fetal Muscle Trunk	muscle

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