Variant report

Variant	rs17107065
Chromosome Location	chr14:69999156-69999157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1045301	1.00[CHB][hapmap]
rs12050199	1.00[CHB][hapmap]
rs12050204	1.00[CHB][hapmap]
rs12589107	1.00[CHB][hapmap]
rs12589533	1.00[CHB][hapmap]
rs12893687	1.00[CHB][hapmap]
rs17107026	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17107033	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17107046	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17107058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982432	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72625684	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3396933	chr14:69906914-70001258	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv510642	chr14:69983293-70030335	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69996400-70000400	Enhancers	Stomach Mucosa	stomach
2	chr14:69998600-70000400	Enhancers	Esophagus	oesophagus
3	chr14:69998800-70000000	Enhancers	Colonic Mucosa	Colon
4	chr14:69998800-70000200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr14:69998800-70000200	Enhancers	Hela-S3	cervix
6	chr14:69999000-69999800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:69999000-69999800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:69999000-69999800	Enhancers	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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