Variant report

Variant	rs61981687
Chromosome Location	chr14:81053330-81053331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:80679969..80680577-chr14:81052998..81054035,4	MCF-7	breast:
2	chr14:80668488..80671365-chr14:81052766..81054886,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10144929	0.95[ASN][1000 genomes]
rs10145128	0.95[ASN][1000 genomes]
rs10498545	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12586967	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12589323	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17110770	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17110773	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17110806	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17110817	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17110818	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17110831	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1972998	0.96[ASN][1000 genomes]
rs59152876	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981671	0.86[EUR][1000 genomes]
rs61981672	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61981673	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61981698	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61981699	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61981702	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7148681	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7149118	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7149425	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7154706	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73328647	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8013740	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8015643	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8017795	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv902116	chr14:81018237-81082400	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81046400-81053600	Weak transcription	Thymus	Thymus
2	chr14:81046600-81053600	Weak transcription	Dnd41	blood
3	chr14:81050800-81054600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr14:81051200-81054200	Enhancers	Primary T cells from cord blood	blood
5	chr14:81051400-81053600	Weak transcription	Osteobl	bone
6	chr14:81051800-81053600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:81051800-81053800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:81052000-81053400	Enhancers	A549	lung
9	chr14:81052200-81053600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr14:81052400-81053600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:81052400-81070000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:81052600-81053400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr14:81052600-81053800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr14:81052600-81054000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr14:81052800-81053600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr14:81052800-81053600	Weak transcription	HMEC	breast
17	chr14:81052800-81053600	Weak transcription	NH-A	brain
18	chr14:81052800-81057200	Weak transcription	Hela-S3	cervix
19	chr14:81053000-81054600	Enhancers	GM12878-XiMat	blood
20	chr14:81053200-81054000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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