Variant report

Variant	rs10145128
Chromosome Location	chr14:81067227-81067228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10129853	0.80[AFR][1000 genomes]
rs10144929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10498545	1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs12586967	0.95[ASN][1000 genomes]
rs12589323	0.87[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs17110773	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs17110806	0.82[CHB][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs17110817	1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs17110818	1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs17110831	1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs1868633	0.81[CHB][hapmap]
rs1972998	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59152876	0.95[ASN][1000 genomes]
rs61981687	0.95[ASN][1000 genomes]
rs61981698	0.99[ASN][1000 genomes]
rs61981699	0.98[ASN][1000 genomes]
rs61981702	1.00[ASN][1000 genomes]
rs6574592	0.83[AFR][1000 genomes]
rs7148681	0.90[CHB][hapmap]
rs7149118	0.91[JPT][hapmap]
rs7149425	0.87[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs7154706	0.87[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs73328647	0.94[ASN][1000 genomes]
rs8003492	0.89[YRI][hapmap]
rs8013740	0.87[CHB][hapmap];0.92[JPT][hapmap]
rs8015643	0.87[CHB][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs8017795	1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv902116	chr14:81018237-81082400	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81052400-81070000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:81062200-81082200	Weak transcription	Dnd41	blood

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