Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10144929	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10145128	0.89[YRI][hapmap]
rs10498547	0.83[ASN][1000 genomes]
rs11159470	0.95[ASN][1000 genomes]
rs11159471	0.83[ASN][1000 genomes]
rs12589019	0.90[ASN][1000 genomes]
rs12589109	0.95[ASN][1000 genomes]
rs17519	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1871458	0.91[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1972998	0.80[LWK][hapmap];0.83[YRI][hapmap]
rs34201956	0.99[ASN][1000 genomes]
rs4903927	0.95[ASN][1000 genomes]
rs4903930	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4903931	0.82[ASN][1000 genomes]
rs6574592	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66523962	0.96[ASN][1000 genomes]
rs7141390	0.88[ASN][1000 genomes]
rs7142417	0.84[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs71430713	0.85[ASN][1000 genomes]
rs7144036	0.91[ASN][1000 genomes]
rs7145447	0.82[CHD][hapmap];0.83[ASN][1000 genomes]
rs7152126	0.96[ASN][1000 genomes]
rs7156452	0.89[ASN][1000 genomes]
rs7158869	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7159302	0.95[ASN][1000 genomes]
rs8007955	0.87[ASN][1000 genomes]
rs8013202	0.85[ASN][1000 genomes]
rs8013610	0.87[ASN][1000 genomes]
rs8018031	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs8003492	ENOX1	trans	cerebellum	SCAN
rs8003492	C14orf145	cis	cerebellum	SCAN
rs8003492	C14orf145	cis	parietal	SCAN
rs8003492	POMT2	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81076200-81086600	Weak transcription	A549	lung
2	chr14:81083400-81109400	Weak transcription	Dnd41	blood
3	chr14:81083600-81088200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:81084800-81086000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr14:81085200-81085400	Enhancers	Hela-S3	cervix
6	chr14:81085200-81085600	Enhancers	Fetal Lung	lung

Quick Search: