Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81124495..81126695-chr14:81127344..81130125,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11159470	0.88[ASN][1000 genomes]
rs11159471	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12161870	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12589019	0.93[ASN][1000 genomes]
rs12589109	0.88[ASN][1000 genomes]
rs17519	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1871458	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34201956	0.82[ASN][1000 genomes]
rs4903927	0.81[ASN][1000 genomes]
rs4903930	0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4903931	0.90[ASN][1000 genomes]
rs6574592	0.83[ASN][1000 genomes]
rs66523962	0.85[ASN][1000 genomes]
rs7141390	0.94[ASN][1000 genomes]
rs7142417	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs71430713	0.90[ASN][1000 genomes]
rs7144036	0.92[ASN][1000 genomes]
rs7145447	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs7152126	0.87[ASN][1000 genomes]
rs7156452	0.94[ASN][1000 genomes]
rs7158869	0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7159302	0.88[ASN][1000 genomes]
rs8003492	0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs8007426	0.96[CEU][hapmap]
rs8007955	0.94[ASN][1000 genomes]
rs8013202	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8018031	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1039554	chr14:81113167-81156335	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv1051964	chr14:81113167-81156847	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81106200-81135400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:81108200-81145800	Weak transcription	Fetal Thymus	thymus
3	chr14:81120800-81130600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:81122600-81129400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:81123800-81124800	Enhancers	Brain Hippocampus Middle	brain
6	chr14:81124000-81125200	Enhancers	Brain Angular Gyrus	brain
7	chr14:81124200-81126000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr14:81124200-81126200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:81124200-81126200	Enhancers	Brain Cingulate Gyrus	brain
10	chr14:81124200-81126400	Enhancers	HepG2	liver
11	chr14:81124400-81124800	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr14:81124400-81125400	Enhancers	Brain Anterior Caudate	brain
13	chr14:81124400-81125600	Enhancers	Brain Germinal Matrix	brain
14	chr14:81124400-81126000	Enhancers	Brain Substantia Nigra	brain
15	chr14:81124600-81125400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:81124600-81125800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:81124600-81133000	Enhancers	Dnd41	blood

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