Variant report

Variant	rs61984791
Chromosome Location	chr14:106146497-106146498
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10144746	0.80[AMR][1000 genomes]
rs10146949	0.89[EUR][1000 genomes]
rs2516747	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2516751	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2516752	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2516755	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2855788	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34678053	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8015375	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61984791	IGHJ6	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106141600-106149600	Weak transcription	Spleen	Spleen
2	chr14:106144600-106149400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr14:106145000-106149000	Weak transcription	GM12878-XiMat	blood
4	chr14:106146000-106146600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr14:106146200-106146600	Enhancers	Primary hematopoietic stem cells	blood
6	chr14:106146200-106146600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
7	chr14:106146200-106146600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr14:106146200-106146600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr14:106146200-106146600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr14:106146200-106146600	Active TSS	Right Ventricle	heart
11	chr14:106146200-106146600	Enhancers	Dnd41	blood
12	chr14:106146200-106147400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr14:106146200-106148200	Weak transcription	Primary B cells from cord blood	blood
14	chr14:106146400-106146600	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr14:106146400-106146600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr14:106146400-106146600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr14:106146400-106147200	Active TSS	Primary B cells from peripheral blood	blood
18	chr14:106146400-106147400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr14:106146400-106148200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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