Variant report

Variant	rs61985771
Chromosome Location	chr14:68976993-68976994
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68933594..68935776-chr14:68976787..68979201,2	MCF-7	breast:
2	chr14:68976640..68979821-chr14:69259766..69263690,3	MCF-7	breast:
3	chr14:68973059..68975623-chr14:68975838..68977423,2	MCF-7	breast:
4	chr14:68939074..68942142-chr14:68974708..68977098,3	MCF-7	breast:
5	chr14:68973167..68978172-chr14:69258473..69260680,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10483810	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2842339	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842343	1.00[EUR][1000 genomes]
rs2842344	1.00[EUR][1000 genomes]
rs57947677	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59404246	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61985769	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61985772	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68967400-68981600	Enhancers	Fetal Muscle Leg	muscle
2	chr14:68967400-68982400	Enhancers	Primary B cells from peripheral blood	blood
3	chr14:68968000-68991200	Enhancers	Fetal Lung	lung
4	chr14:68971000-68983800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:68971800-68981400	Enhancers	Fetal Muscle Trunk	muscle
6	chr14:68972000-68980200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr14:68972600-68982000	Enhancers	Fetal Intestine Small	intestine
8	chr14:68973400-68977000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr14:68973400-68979200	Weak transcription	Right Ventricle	heart
10	chr14:68973400-68981200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr14:68973400-68985000	Weak transcription	Colonic Mucosa	Colon
12	chr14:68973600-68977600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr14:68973800-68984600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr14:68974200-68977000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr14:68974200-68977200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:68974200-68977400	Enhancers	Primary T cells fromperipheralblood	blood
17	chr14:68974200-68979800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr14:68974400-68977000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr14:68974400-68977000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:68974800-68977200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr14:68974800-68984600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr14:68974800-68984800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr14:68975000-68979200	Weak transcription	Small Intestine	intestine
24	chr14:68975200-68978400	Weak transcription	Primary B cells from cord blood	blood
25	chr14:68975200-68978600	Weak transcription	GM12878-XiMat	blood
26	chr14:68975200-68980000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr14:68975400-68978400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr14:68975400-68979200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr14:68975400-68979200	Weak transcription	Spleen	Spleen
30	chr14:68975400-68979400	Weak transcription	Thymus	Thymus
31	chr14:68975400-68981600	Enhancers	Fetal Stomach	stomach
32	chr14:68975600-68977800	Enhancers	HSMMtube	muscle
33	chr14:68975600-68979600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr14:68975600-68979600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr14:68975600-68979800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr14:68975600-68980200	Enhancers	Ovary	ovary
37	chr14:68975600-68980800	Enhancers	Esophagus	oesophagus
38	chr14:68975800-68977000	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr14:68975800-68977400	Enhancers	HepG2	liver
40	chr14:68975800-68977800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr14:68975800-68978000	Enhancers	Placenta	Placenta
42	chr14:68975800-68979200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr14:68975800-68979200	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr14:68975800-68980200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr14:68975800-68980200	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr14:68975800-68980200	Enhancers	NHLF	lung
47	chr14:68975800-68982400	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr14:68976000-68977000	Enhancers	Fetal Kidney	kidney
49	chr14:68976000-68978000	Enhancers	Adipose Nuclei	Adipose
50	chr14:68976000-68978200	Enhancers	Fetal Intestine Large	intestine

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