Variant report

Variant	rs59404246
Chromosome Location	chr14:68990927-68990928
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68990548..68993032-chr14:69095034..69097852,2	MCF-7	breast:
2	chr14:68990793..68991332-chr14:69122376..69122983,2	MCF-7	breast:
3	chr14:68987315..68991799-chr14:69260586..69263580,4	MCF-7	breast:
4	chr14:68990794..68994075-chr14:69256455..69260885,5	MCF-7	breast:
5	chr14:68715321..68716856-chr14:68989735..68992199,2	MCF-7	breast:
6	chr14:68989438..68991863-chr14:69015676..69017457,2	MCF-7	breast:
7	chr14:68927072..68929537-chr14:68988559..68991128,2	MCF-7	breast:
8	chr14:68929507..68933385-chr14:68987583..68991137,3	MCF-7	breast:
9	chr14:68990353..68991309-chr14:69036602..69037256,2	MCF-7	breast:
10	chr14:68986084..68990937-chr14:69249749..69255560,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259038	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10130177	1.00[ASN][1000 genomes]
rs10134240	1.00[ASN][1000 genomes]
rs10137367	1.00[ASN][1000 genomes]
rs10147979	1.00[ASN][1000 genomes]
rs10148391	1.00[ASN][1000 genomes]
rs10483810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483811	1.00[ASN][1000 genomes]
rs11849344	1.00[ASN][1000 genomes]
rs17105810	1.00[ASN][1000 genomes]
rs17105812	1.00[ASN][1000 genomes]
rs17105828	1.00[ASN][1000 genomes]
rs17105829	1.00[ASN][1000 genomes]
rs28377700	1.00[ASN][1000 genomes]
rs2842339	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2842343	0.97[EUR][1000 genomes]
rs2842344	0.97[EUR][1000 genomes]
rs28454359	1.00[ASN][1000 genomes]
rs28492919	1.00[ASN][1000 genomes]
rs28671277	1.00[ASN][1000 genomes]
rs57947677	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61985771	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61985772	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72727502	1.00[ASN][1000 genomes]
rs72729521	1.00[ASN][1000 genomes]
rs8017678	1.00[ASN][1000 genomes]
rs9323515	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68968000-68991200	Enhancers	Fetal Lung	lung
2	chr14:68983600-68991200	Enhancers	NHEK	skin
3	chr14:68983800-68991600	Enhancers	Fetal Muscle Leg	muscle
4	chr14:68983800-68991800	Enhancers	Fetal Stomach	stomach
5	chr14:68984200-68991200	Enhancers	Fetal Heart	heart
6	chr14:68984200-68991800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr14:68984600-68991400	Enhancers	Placenta Amnion	Placenta Amnion
8	chr14:68984600-68991600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:68984600-68991800	Enhancers	Placenta	Placenta
10	chr14:68985800-68994800	Weak transcription	Aorta	Aorta
11	chr14:68986000-68991800	Enhancers	Rectal Smooth Muscle	rectum
12	chr14:68986000-68993400	Weak transcription	Brain Angular Gyrus	brain
13	chr14:68986400-68991600	Enhancers	Colon Smooth Muscle	Colon
14	chr14:68986400-68993000	Weak transcription	NH-A	brain
15	chr14:68987000-68991600	Weak transcription	Thymus	Thymus
16	chr14:68987400-68991800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr14:68987400-68993600	Enhancers	HSMM	muscle
18	chr14:68987400-68996200	Enhancers	Pancreas	Pancrea
19	chr14:68987600-68991200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr14:68987600-68991400	Enhancers	Esophagus	oesophagus
21	chr14:68987600-68992000	Enhancers	NHLF	lung
22	chr14:68987600-68993400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr14:68987800-68991800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr14:68987800-68991800	Enhancers	Fetal Kidney	kidney
25	chr14:68988000-68991400	Enhancers	Adipose Nuclei	Adipose
26	chr14:68988000-68991800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr14:68988200-68992000	Enhancers	NHDF-Ad	bronchial
28	chr14:68988200-68993600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr14:68988400-68991000	Enhancers	Liver	Liver
30	chr14:68988400-68991400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr14:68988400-68991800	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr14:68988400-68993400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr14:68988600-68991000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr14:68988600-68991400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr14:68988600-68993800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr14:68988800-68991800	Weak transcription	Hela-S3	cervix
37	chr14:68988800-68993400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr14:68989000-68993000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr14:68989200-68991600	Weak transcription	Lung	lung
40	chr14:68989200-68993200	Weak transcription	Psoas Muscle	Psoas
41	chr14:68989400-68991200	Enhancers	Brain Hippocampus Middle	brain
42	chr14:68989400-68993000	Weak transcription	A549	lung
43	chr14:68989600-68991400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr14:68989600-68991400	Enhancers	Ovary	ovary
45	chr14:68989600-68993000	Weak transcription	Stomach Mucosa	stomach
46	chr14:68989600-68993000	Weak transcription	HMEC	breast
47	chr14:68989600-68993200	Weak transcription	Gastric	stomach
48	chr14:68989800-68993000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr14:68989800-68993800	Weak transcription	Primary B cells from cord blood	blood
50	chr14:68990000-68994200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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