Variant report

Variant	rs10147979
Chromosome Location	chr14:68994898-68994899
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68994426..68996258-chr14:69013993..69016421,2	MCF-7	breast:
2	chr14:68982120..68984316-chr14:68992913..68995083,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10130177	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10134240	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137367	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10148391	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483810	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10483811	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483814	1.00[CHB][hapmap]
rs11849344	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105810	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105812	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105828	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105829	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17829180	1.00[CHB][hapmap]
rs17829192	1.00[CHB][hapmap]
rs28377700	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842339	1.00[CHB][hapmap]
rs28454359	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28492919	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28558877	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28671277	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28672240	0.81[AFR][1000 genomes]
rs59404246	1.00[ASN][1000 genomes]
rs6573841	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs72727502	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729521	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016149	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs8017678	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323515	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1048064	chr14:68991041-69012766	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68987400-68996200	Enhancers	Pancreas	Pancrea
2	chr14:68990000-68995400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr14:68990000-68995600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:68990000-68996000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:68992600-68996000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr14:68993000-68995000	Enhancers	Fetal Intestine Large	intestine
7	chr14:68993000-68995000	Enhancers	Fetal Kidney	kidney
8	chr14:68993000-68995800	Enhancers	Liver	Liver
9	chr14:68993200-68995000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr14:68993200-68995200	Enhancers	Rectal Smooth Muscle	rectum
11	chr14:68993200-68995600	Enhancers	Colon Smooth Muscle	Colon
12	chr14:68993400-68995000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:68993400-68995000	Enhancers	Duodenum Mucosa	Duodenum
14	chr14:68993400-68995000	Enhancers	Right Atrium	heart
15	chr14:68993400-68995000	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr14:68993600-68995200	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr14:68993600-68996600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr14:68993800-68995200	Enhancers	Fetal Intestine Small	intestine
19	chr14:68993800-68995400	Enhancers	Primary B cells from cord blood	blood
20	chr14:68993800-68995800	Enhancers	Primary B cells from peripheral blood	blood
21	chr14:68993800-68996000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr14:68994000-68995000	Enhancers	Fetal Lung	lung
23	chr14:68994000-68995200	Enhancers	HUVEC	blood vessel
24	chr14:68994000-68995800	Enhancers	Hela-S3	cervix
25	chr14:68994200-68995000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr14:68994200-68995000	Enhancers	Stomach Mucosa	stomach
27	chr14:68994200-68995000	Enhancers	HSMM	muscle
28	chr14:68994200-68995000	Enhancers	Osteobl	bone
29	chr14:68994200-68995200	Enhancers	Muscle Satellite Cultured Cells	--
30	chr14:68994200-68995800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr14:68994200-68996000	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr14:68994400-68995000	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr14:68994400-68995000	Enhancers	HSMMtube	muscle
34	chr14:68994400-68995200	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr14:68994400-69001800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr14:68994600-68995000	Enhancers	Primary T cells from cord blood	blood
37	chr14:68994600-68996000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr14:68994800-68995000	Enhancers	Aorta	Aorta
39	chr14:68994800-68995000	Enhancers	Gastric	stomach
40	chr14:68994800-68995000	Enhancers	Rectal Mucosa Donor 29	rectum
41	chr14:68994800-68996000	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links